miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19459 5' -57.6 NC_004685.1 + 42934 0.66 0.66761
Target:  5'- cCGCCGCCGuUGCCgccgcucagcgcaaACAgggcgaCCUGGCc -3'
miRNA:   3'- uGCGGUGGCuACGGa-------------UGUa-----GGACCGc -5'
19459 5' -57.6 NC_004685.1 + 45911 0.66 0.663345
Target:  5'- gACGgUGCCGAUGCgCUGCGccaccUCCagGGCc -3'
miRNA:   3'- -UGCgGUGGCUACG-GAUGU-----AGGa-CCGc -5'
19459 5' -57.6 NC_004685.1 + 39061 0.66 0.663345
Target:  5'- cGCGCCGCCGucGCCgAUGUCCaccGCGa -3'
miRNA:   3'- -UGCGGUGGCuaCGGaUGUAGGac-CGC- -5'
19459 5' -57.6 NC_004685.1 + 57289 0.66 0.652666
Target:  5'- gACGCgGCCGGUGCCgcCAaCgaGGuCGg -3'
miRNA:   3'- -UGCGgUGGCUACGGauGUaGgaCC-GC- -5'
19459 5' -57.6 NC_004685.1 + 495 0.66 0.652666
Target:  5'- -aGCuCGCCGccGCCUACGagcagcUCgaGGCGg -3'
miRNA:   3'- ugCG-GUGGCuaCGGAUGU------AGgaCCGC- -5'
19459 5' -57.6 NC_004685.1 + 3034 0.66 0.652666
Target:  5'- -gGCCAUcaCGGaGCCU-CGucUCCUGGCGg -3'
miRNA:   3'- ugCGGUG--GCUaCGGAuGU--AGGACCGC- -5'
19459 5' -57.6 NC_004685.1 + 11423 0.66 0.651596
Target:  5'- -gGCCGCCGcuGUGCCUuuccacgggauccACAcCCcGGCGu -3'
miRNA:   3'- ugCGGUGGC--UACGGA-------------UGUaGGaCCGC- -5'
19459 5' -57.6 NC_004685.1 + 56160 0.66 0.641968
Target:  5'- cCGCgGUCGGUGCCU-CGUCggGGCGg -3'
miRNA:   3'- uGCGgUGGCUACGGAuGUAGgaCCGC- -5'
19459 5' -57.6 NC_004685.1 + 30278 0.66 0.641968
Target:  5'- cGCGgCGCCGA--CCUACGacaaCCUGGCc -3'
miRNA:   3'- -UGCgGUGGCUacGGAUGUa---GGACCGc -5'
19459 5' -57.6 NC_004685.1 + 29012 0.66 0.641968
Target:  5'- cGCGCCGCCcaGcgGCCcgggucgaaGUCCUGGUu -3'
miRNA:   3'- -UGCGGUGG--CuaCGGaug------UAGGACCGc -5'
19459 5' -57.6 NC_004685.1 + 32585 0.66 0.631262
Target:  5'- uUGCCGCCGuUGCCUGCcagGUUg-GGCa -3'
miRNA:   3'- uGCGGUGGCuACGGAUG---UAGgaCCGc -5'
19459 5' -57.6 NC_004685.1 + 42753 0.66 0.631262
Target:  5'- aGCGgCugauCCGGUGCCUGC--CUUGGCc -3'
miRNA:   3'- -UGCgGu---GGCUACGGAUGuaGGACCGc -5'
19459 5' -57.6 NC_004685.1 + 18584 0.66 0.631262
Target:  5'- -gGCCACCGcggcagcaucgGUGCCaucaACGUCCUGucccGCGa -3'
miRNA:   3'- ugCGGUGGC-----------UACGGa---UGUAGGAC----CGC- -5'
19459 5' -57.6 NC_004685.1 + 69565 0.66 0.631262
Target:  5'- cGCGCCcgcGCCGGUcGCCgcUACcgCCUaGCGg -3'
miRNA:   3'- -UGCGG---UGGCUA-CGG--AUGuaGGAcCGC- -5'
19459 5' -57.6 NC_004685.1 + 4100 0.66 0.631262
Target:  5'- -gGCCGCUGAUGCCgACAUagcCCUcgucaGGUGu -3'
miRNA:   3'- ugCGGUGGCUACGGaUGUA---GGA-----CCGC- -5'
19459 5' -57.6 NC_004685.1 + 13774 0.66 0.620557
Target:  5'- uGCGCCGcacCCGcgGCCagUACGaCCcGGCGa -3'
miRNA:   3'- -UGCGGU---GGCuaCGG--AUGUaGGaCCGC- -5'
19459 5' -57.6 NC_004685.1 + 32352 0.66 0.620557
Target:  5'- cGCGCCACCGGcgGCCgacgcggccGCGUUCaGcGCGg -3'
miRNA:   3'- -UGCGGUGGCUa-CGGa--------UGUAGGaC-CGC- -5'
19459 5' -57.6 NC_004685.1 + 7915 0.66 0.620557
Target:  5'- cCGCCGCCGAgauuucuuCCUGgcCAUCacgCUGGCGa -3'
miRNA:   3'- uGCGGUGGCUac------GGAU--GUAG---GACCGC- -5'
19459 5' -57.6 NC_004685.1 + 20533 0.66 0.620557
Target:  5'- aACGCCACCaccGCCagcgacgagUACAUCCgccGGCu -3'
miRNA:   3'- -UGCGGUGGcuaCGG---------AUGUAGGa--CCGc -5'
19459 5' -57.6 NC_004685.1 + 53358 0.66 0.620557
Target:  5'- cGCGgCGCCGGUgGCCgcgGCgAUgCUGGCc -3'
miRNA:   3'- -UGCgGUGGCUA-CGGa--UG-UAgGACCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.