miRNA display CGI


Results 1 - 20 of 61 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19459 5' -57.6 NC_004685.1 + 4100 0.66 0.631262
Target:  5'- -gGCCGCUGAUGCCgACAUagcCCUcgucaGGUGu -3'
miRNA:   3'- ugCGGUGGCUACGGaUGUA---GGA-----CCGC- -5'
19459 5' -57.6 NC_004685.1 + 42507 0.67 0.567343
Target:  5'- -aGCCGCCGGUGCUgACGUgUUcGCGg -3'
miRNA:   3'- ugCGGUGGCUACGGaUGUAgGAcCGC- -5'
19459 5' -57.6 NC_004685.1 + 68473 0.67 0.567343
Target:  5'- cCGCCAguCCGAUGCg-GCccCCUGGCc -3'
miRNA:   3'- uGCGGU--GGCUACGgaUGuaGGACCGc -5'
19459 5' -57.6 NC_004685.1 + 44769 0.67 0.588533
Target:  5'- gACGCCgacACCGcgcggGCCUGCGaagacaagcugUUCUGGCa -3'
miRNA:   3'- -UGCGG---UGGCua---CGGAUGU-----------AGGACCGc -5'
19459 5' -57.6 NC_004685.1 + 13317 0.67 0.588533
Target:  5'- gGCGUUGCCGccGCC-GCGgagUCUGGCGa -3'
miRNA:   3'- -UGCGGUGGCuaCGGaUGUa--GGACCGC- -5'
19459 5' -57.6 NC_004685.1 + 31167 0.67 0.599184
Target:  5'- uCGCCGCCGc-GCCg--GUCCUGgGCGc -3'
miRNA:   3'- uGCGGUGGCuaCGGaugUAGGAC-CGC- -5'
19459 5' -57.6 NC_004685.1 + 7915 0.66 0.620557
Target:  5'- cCGCCGCCGAgauuucuuCCUGgcCAUCacgCUGGCGa -3'
miRNA:   3'- uGCGGUGGCUac------GGAU--GUAG---GACCGC- -5'
19459 5' -57.6 NC_004685.1 + 20533 0.66 0.620557
Target:  5'- aACGCCACCaccGCCagcgacgagUACAUCCgccGGCu -3'
miRNA:   3'- -UGCGGUGGcuaCGG---------AUGUAGGa--CCGc -5'
19459 5' -57.6 NC_004685.1 + 53358 0.66 0.620557
Target:  5'- cGCGgCGCCGGUgGCCgcgGCgAUgCUGGCc -3'
miRNA:   3'- -UGCgGUGGCUA-CGGa--UG-UAgGACCGc -5'
19459 5' -57.6 NC_004685.1 + 63819 0.67 0.55682
Target:  5'- uGCGCCucCCGGUGCag--AUCCcGGCGa -3'
miRNA:   3'- -UGCGGu-GGCUACGgaugUAGGaCCGC- -5'
19459 5' -57.6 NC_004685.1 + 6430 0.68 0.550532
Target:  5'- gGCGCCAagggcaucaccuggcCCGAacaGCCcgGCAccCCUGGCGg -3'
miRNA:   3'- -UGCGGU---------------GGCUa--CGGa-UGUa-GGACCGC- -5'
19459 5' -57.6 NC_004685.1 + 66003 0.68 0.546352
Target:  5'- cGCGCCgaGCCGucgGCgUcGCgguaGUCCUGGCGg -3'
miRNA:   3'- -UGCGG--UGGCua-CGgA-UG----UAGGACCGC- -5'
19459 5' -57.6 NC_004685.1 + 32268 0.75 0.207688
Target:  5'- -gGCCGCCGGUGgCgcggGCgGUCCUGGUGg -3'
miRNA:   3'- ugCGGUGGCUACgGa---UG-UAGGACCGC- -5'
19459 5' -57.6 NC_004685.1 + 61928 0.72 0.317385
Target:  5'- gACGCCAgaCGAUGCggucgugcACGUCCUGGCu -3'
miRNA:   3'- -UGCGGUg-GCUACGga------UGUAGGACCGc -5'
19459 5' -57.6 NC_004685.1 + 41400 0.7 0.403573
Target:  5'- uCGCCGCUcAUcGCCUACAUCgacgacgcggacggaCUGGCGg -3'
miRNA:   3'- uGCGGUGGcUA-CGGAUGUAG---------------GACCGC- -5'
19459 5' -57.6 NC_004685.1 + 23728 0.7 0.418087
Target:  5'- aGCGCCACUGGggcuggaagacGCCUAC-UCC-GGCGu -3'
miRNA:   3'- -UGCGGUGGCUa----------CGGAUGuAGGaCCGC- -5'
19459 5' -57.6 NC_004685.1 + 8873 0.69 0.436668
Target:  5'- uCGCCGCUGGUGUCggccCGUCUgacgaUGGCGa -3'
miRNA:   3'- uGCGGUGGCUACGGau--GUAGG-----ACCGC- -5'
19459 5' -57.6 NC_004685.1 + 58748 0.69 0.446135
Target:  5'- aACGCCugcCCGGcgcgGuCCUGCAUCCaGGUGa -3'
miRNA:   3'- -UGCGGu--GGCUa---C-GGAUGUAGGaCCGC- -5'
19459 5' -57.6 NC_004685.1 + 58570 0.69 0.4851
Target:  5'- cGCGCCcaggUCGAUGCCcaACGUCUcGGCGu -3'
miRNA:   3'- -UGCGGu---GGCUACGGa-UGUAGGaCCGC- -5'
19459 5' -57.6 NC_004685.1 + 34578 0.68 0.525616
Target:  5'- cCGCgGCCGAcgcUGCCgaGCG-CCUGGCc -3'
miRNA:   3'- uGCGgUGGCU---ACGGa-UGUaGGACCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.