miRNA display CGI


Results 1 - 19 of 19 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1946 5' -50.9 NC_001347.2 + 88353 0.66 0.998149
Target:  5'- cGUCgccGCUGGCGGCGcUGCCgCGAGAc- -3'
miRNA:   3'- -CAGau-CGGUUGUUGC-ACGG-GUUCUag -5'
1946 5' -50.9 NC_001347.2 + 91407 0.66 0.997753
Target:  5'- -gCUGGCCAAUcGCGUGCugcaguaccucauCCAcgccuuccAGAUCg -3'
miRNA:   3'- caGAUCGGUUGuUGCACG-------------GGU--------UCUAG- -5'
1946 5' -50.9 NC_001347.2 + 80683 0.66 0.996904
Target:  5'- ----cGCCGGCAGcCG-GCCCAGGAc- -3'
miRNA:   3'- cagauCGGUUGUU-GCaCGGGUUCUag -5'
1946 5' -50.9 NC_001347.2 + 40609 0.66 0.996359
Target:  5'- uUCUGGCCGcCGGCGaUGCCgGGGuGUUg -3'
miRNA:   3'- cAGAUCGGUuGUUGC-ACGGgUUC-UAG- -5'
1946 5' -50.9 NC_001347.2 + 174048 0.66 0.995738
Target:  5'- gGUUUcAGCUGGCAACGUGCCaCGuGAcUCa -3'
miRNA:   3'- -CAGA-UCGGUUGUUGCACGG-GUuCU-AG- -5'
1946 5' -50.9 NC_001347.2 + 90254 0.67 0.995034
Target:  5'- cGUCUA--CGACGGCGUuugGCCCGAGAc- -3'
miRNA:   3'- -CAGAUcgGUUGUUGCA---CGGGUUCUag -5'
1946 5' -50.9 NC_001347.2 + 116030 0.67 0.995034
Target:  5'- -cUUGGaCAACAugGUGgCCAGGAUg -3'
miRNA:   3'- caGAUCgGUUGUugCACgGGUUCUAg -5'
1946 5' -50.9 NC_001347.2 + 203190 0.67 0.995034
Target:  5'- aUUUAGCCAuGCAGCGUGCggcgCCucucucauGGAUCc -3'
miRNA:   3'- cAGAUCGGU-UGUUGCACG----GGu-------UCUAG- -5'
1946 5' -50.9 NC_001347.2 + 142063 0.67 0.994321
Target:  5'- cGUCUGGCCGACGugcucaucaaacgcuCGcGCCgCGAGAa- -3'
miRNA:   3'- -CAGAUCGGUUGUu--------------GCaCGG-GUUCUag -5'
1946 5' -50.9 NC_001347.2 + 127570 0.67 0.992336
Target:  5'- -----cCCAACAGCGUGCCCGuGGAc- -3'
miRNA:   3'- cagaucGGUUGUUGCACGGGU-UCUag -5'
1946 5' -50.9 NC_001347.2 + 196457 0.67 0.991214
Target:  5'- ---cGGCCGGCGACGUGgCCCGc-GUCc -3'
miRNA:   3'- cagaUCGGUUGUUGCAC-GGGUucUAG- -5'
1946 5' -50.9 NC_001347.2 + 116771 0.68 0.989967
Target:  5'- ---gAGCUgcGACAGCGUGaCCgCGGGGUCg -3'
miRNA:   3'- cagaUCGG--UUGUUGCAC-GG-GUUCUAG- -5'
1946 5' -50.9 NC_001347.2 + 141481 0.68 0.988585
Target:  5'- gGUCUGuuCCAAC-GCGuUGCCCAAGAa- -3'
miRNA:   3'- -CAGAUc-GGUUGuUGC-ACGGGUUCUag -5'
1946 5' -50.9 NC_001347.2 + 200984 0.69 0.979349
Target:  5'- cGUCUAcGCCuGCGACGUGCgCGAcGAc- -3'
miRNA:   3'- -CAGAU-CGGuUGUUGCACGgGUU-CUag -5'
1946 5' -50.9 NC_001347.2 + 197567 0.7 0.962044
Target:  5'- ---cGGCCGacgGCAGCGUGCUgugcuaCGAGAUCa -3'
miRNA:   3'- cagaUCGGU---UGUUGCACGG------GUUCUAG- -5'
1946 5' -50.9 NC_001347.2 + 197845 0.7 0.958398
Target:  5'- ---aAGCCGGCAACGUGCCaucAGcgCu -3'
miRNA:   3'- cagaUCGGUUGUUGCACGGgu-UCuaG- -5'
1946 5' -50.9 NC_001347.2 + 109683 0.7 0.954519
Target:  5'- -cCUGGCCcGCAACcugGUGCCCAuGGUg -3'
miRNA:   3'- caGAUCGGuUGUUG---CACGGGUuCUAg -5'
1946 5' -50.9 NC_001347.2 + 101255 0.71 0.936592
Target:  5'- cGUgUGGCCAGCGGCGccgguuUGCCCAcuAGucGUCa -3'
miRNA:   3'- -CAgAUCGGUUGUUGC------ACGGGU--UC--UAG- -5'
1946 5' -50.9 NC_001347.2 + 39135 0.72 0.920548
Target:  5'- cGUCcgAGCggCAGCAGCGUGCCCGc-GUCg -3'
miRNA:   3'- -CAGa-UCG--GUUGUUGCACGGGUucUAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.