miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19460 3' -58.7 NC_004685.1 + 54844 0.66 0.592383
Target:  5'- cGGGCGACgCGGCGA--UGGCgGUGCGg -3'
miRNA:   3'- uCCCGCUG-GUUGCUggACUG-CGCGUu -5'
19460 3' -58.7 NC_004685.1 + 30214 0.66 0.592383
Target:  5'- uGGGCG-CC-GCGGCCaucugGGCGaCGCAc -3'
miRNA:   3'- uCCCGCuGGuUGCUGGa----CUGC-GCGUu -5'
19460 3' -58.7 NC_004685.1 + 65940 0.66 0.592383
Target:  5'- cGGGCGAacacgucgcCCAGCguGACgUGGCGCuGCGc -3'
miRNA:   3'- uCCCGCU---------GGUUG--CUGgACUGCG-CGUu -5'
19460 3' -58.7 NC_004685.1 + 32344 0.66 0.581768
Target:  5'- -cGGCGGCCGacGCGGCCgcguucaGCGCGGa -3'
miRNA:   3'- ucCCGCUGGU--UGCUGGacug---CGCGUU- -5'
19460 3' -58.7 NC_004685.1 + 6077 0.66 0.571193
Target:  5'- cGGGCcaGCaCAGCGuCCgcGACGCGCGGa -3'
miRNA:   3'- uCCCGc-UG-GUUGCuGGa-CUGCGCGUU- -5'
19460 3' -58.7 NC_004685.1 + 9208 0.66 0.560665
Target:  5'- gGGGGCGACCccGACG-CCaagGAggccaGCGCGGa -3'
miRNA:   3'- -UCCCGCUGG--UUGCuGGa--CUg----CGCGUU- -5'
19460 3' -58.7 NC_004685.1 + 31232 0.66 0.559615
Target:  5'- aAGGGCG-UCGGCucgGGCCUGGucggcaucgcggcCGCGCAGa -3'
miRNA:   3'- -UCCCGCuGGUUG---CUGGACU-------------GCGCGUU- -5'
19460 3' -58.7 NC_004685.1 + 45749 0.66 0.556468
Target:  5'- gGGGGUGGuCCGcgaugagucugcuCGACacgCUGGCGCGCAAc -3'
miRNA:   3'- -UCCCGCU-GGUu------------GCUG---GACUGCGCGUU- -5'
19460 3' -58.7 NC_004685.1 + 16249 0.66 0.550191
Target:  5'- cAGGcCGA-UGACGACCUGGCGCgGCGc -3'
miRNA:   3'- -UCCcGCUgGUUGCUGGACUGCG-CGUu -5'
19460 3' -58.7 NC_004685.1 + 36969 0.66 0.550191
Target:  5'- cGGccGCGGCCGACGauguuGCCgGACGcCGCGGu -3'
miRNA:   3'- uCC--CGCUGGUUGC-----UGGaCUGC-GCGUU- -5'
19460 3' -58.7 NC_004685.1 + 19109 0.66 0.54706
Target:  5'- cAGGGCaGCCAGCGugCgccacaccuucgcgUGguucuGCGCGCAGc -3'
miRNA:   3'- -UCCCGcUGGUUGCugG--------------AC-----UGCGCGUU- -5'
19460 3' -58.7 NC_004685.1 + 5908 0.66 0.543935
Target:  5'- gAGGGUGGCCAucgcguucaucccucGCGGCgC-GACGCuGCAc -3'
miRNA:   3'- -UCCCGCUGGU---------------UGCUG-GaCUGCG-CGUu -5'
19460 3' -58.7 NC_004685.1 + 51408 0.66 0.539778
Target:  5'- gAGGuGaCGAUCAGCGucgccCCUGACGCGa-- -3'
miRNA:   3'- -UCC-C-GCUGGUUGCu----GGACUGCGCguu -5'
19460 3' -58.7 NC_004685.1 + 48229 0.66 0.539778
Target:  5'- cGGGGUGguGCCGgcaugagcuACGACCUGGaccUGCGUAGc -3'
miRNA:   3'- -UCCCGC--UGGU---------UGCUGGACU---GCGCGUU- -5'
19460 3' -58.7 NC_004685.1 + 32256 0.66 0.539778
Target:  5'- --cGCGGCCGcguCGGCCgccgGugGCGCGGg -3'
miRNA:   3'- uccCGCUGGUu--GCUGGa---CugCGCGUU- -5'
19460 3' -58.7 NC_004685.1 + 1981 0.67 0.529432
Target:  5'- cGGGCacGGCC-GCGGCCUGAcCGaCGCc- -3'
miRNA:   3'- uCCCG--CUGGuUGCUGGACU-GC-GCGuu -5'
19460 3' -58.7 NC_004685.1 + 33190 0.67 0.51916
Target:  5'- uGGGCG-CCGguGCGGug-GACGCGCAAc -3'
miRNA:   3'- uCCCGCuGGU--UGCUggaCUGCGCGUU- -5'
19460 3' -58.7 NC_004685.1 + 18022 0.67 0.51916
Target:  5'- aAGGcGCGGCCAACaugCUGccGCGCGCGGu -3'
miRNA:   3'- -UCC-CGCUGGUUGcugGAC--UGCGCGUU- -5'
19460 3' -58.7 NC_004685.1 + 35672 0.67 0.51916
Target:  5'- --aGUGGCuCAACGACCUGAUGaaCGCGAc -3'
miRNA:   3'- uccCGCUG-GUUGCUGGACUGC--GCGUU- -5'
19460 3' -58.7 NC_004685.1 + 18768 0.67 0.518138
Target:  5'- cGGGUGGCCGugGcgcgcaucugaccGCCgagGAcCGCGCGg -3'
miRNA:   3'- uCCCGCUGGUugC-------------UGGa--CU-GCGCGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.