miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19460 5' -58 NC_004685.1 + 23914 0.66 0.62089
Target:  5'- uGGCUGgGCGAGGuGuACCGCgcagCGAaCACg -3'
miRNA:   3'- -UCGACgCGUUCCuC-UGGUG----GCUcGUG- -5'
19460 5' -58 NC_004685.1 + 28118 0.66 0.62089
Target:  5'- cAGCUGUcCAGGGcGACCAacgacCUGAcGCGCa -3'
miRNA:   3'- -UCGACGcGUUCCuCUGGU-----GGCU-CGUG- -5'
19460 5' -58 NC_004685.1 + 8714 0.66 0.62089
Target:  5'- uGGCgcaacuCGCAGGGccAGACCAUCG-GCAUc -3'
miRNA:   3'- -UCGac----GCGUUCC--UCUGGUGGCuCGUG- -5'
19460 5' -58 NC_004685.1 + 50690 0.66 0.62089
Target:  5'- uGGCUGuCGC-AGGccACCAUCcAGCACa -3'
miRNA:   3'- -UCGAC-GCGuUCCucUGGUGGcUCGUG- -5'
19460 5' -58 NC_004685.1 + 28851 0.66 0.62089
Target:  5'- uGCUgGCGCAgcugauccuGGGAGACCGaggugUCGcGCGCc -3'
miRNA:   3'- uCGA-CGCGU---------UCCUCUGGU-----GGCuCGUG- -5'
19460 5' -58 NC_004685.1 + 66541 0.66 0.62089
Target:  5'- aGGCgGC-CGAGGAGuccgGCUACgUGAGCGCu -3'
miRNA:   3'- -UCGaCGcGUUCCUC----UGGUG-GCUCGUG- -5'
19460 5' -58 NC_004685.1 + 50724 0.66 0.619812
Target:  5'- gAGCaucccgacCGCAAGGAGGCCAUCGuccugacGGCGa -3'
miRNA:   3'- -UCGac------GCGUUCCUCUGGUGGC-------UCGUg -5'
19460 5' -58 NC_004685.1 + 50139 0.66 0.610111
Target:  5'- gAGCUGCGCAAGGcucguGACga--GGGCAa -3'
miRNA:   3'- -UCGACGCGUUCCu----CUGguggCUCGUg -5'
19460 5' -58 NC_004685.1 + 9534 0.66 0.610111
Target:  5'- gGGCgGCgGCAAGGGugcggcgauGGCCACgGcGCGCg -3'
miRNA:   3'- -UCGaCG-CGUUCCU---------CUGGUGgCuCGUG- -5'
19460 5' -58 NC_004685.1 + 38677 0.66 0.610111
Target:  5'- uGGUggGCGUccugGAGGGGACCAgcucacCCG-GCGCa -3'
miRNA:   3'- -UCGa-CGCG----UUCCUCUGGU------GGCuCGUG- -5'
19460 5' -58 NC_004685.1 + 2874 0.66 0.610111
Target:  5'- cGGCcggUGCGCAcGGcgcuGGCCAggaUCGGGCACc -3'
miRNA:   3'- -UCG---ACGCGUuCCu---CUGGU---GGCUCGUG- -5'
19460 5' -58 NC_004685.1 + 21556 0.66 0.59935
Target:  5'- gGGUugaccgGCGCAaacAGGGGACCgaagucGCCcAGCACg -3'
miRNA:   3'- -UCGa-----CGCGU---UCCUCUGG------UGGcUCGUG- -5'
19460 5' -58 NC_004685.1 + 58611 0.66 0.59935
Target:  5'- uGCUGCGCAGuGucgccgcGGCCACCGA-CAUg -3'
miRNA:   3'- uCGACGCGUUcCu------CUGGUGGCUcGUG- -5'
19460 5' -58 NC_004685.1 + 54035 0.66 0.59935
Target:  5'- cAGgUGUGCGGGGAuGCCG-CGGGCGa -3'
miRNA:   3'- -UCgACGCGUUCCUcUGGUgGCUCGUg -5'
19460 5' -58 NC_004685.1 + 51367 0.66 0.588616
Target:  5'- -cCUGCGCGAcaGGGCCACCu-GCACc -3'
miRNA:   3'- ucGACGCGUUccUCUGGUGGcuCGUG- -5'
19460 5' -58 NC_004685.1 + 41964 0.66 0.577916
Target:  5'- gGGaCUGUGUAGGGAa--CACCG-GCGCg -3'
miRNA:   3'- -UC-GACGCGUUCCUcugGUGGCuCGUG- -5'
19460 5' -58 NC_004685.1 + 22392 0.66 0.577916
Target:  5'- cGCgaugggGCGCGacgacgaaccGGGAGGCCcgcccGCCGAccaGCGCa -3'
miRNA:   3'- uCGa-----CGCGU----------UCCUCUGG-----UGGCU---CGUG- -5'
19460 5' -58 NC_004685.1 + 23621 0.66 0.577916
Target:  5'- cGUcGCGUAGGGGuGACCGgggucgcccgcgUCGGGCGCg -3'
miRNA:   3'- uCGaCGCGUUCCU-CUGGU------------GGCUCGUG- -5'
19460 5' -58 NC_004685.1 + 19115 0.66 0.56726
Target:  5'- cGCcGCGCu-GGAGGCggCGCCG-GCGCc -3'
miRNA:   3'- uCGaCGCGuuCCUCUG--GUGGCuCGUG- -5'
19460 5' -58 NC_004685.1 + 7400 0.67 0.556655
Target:  5'- aAGCgGUGCGAGGgcgcAGGCCAgCGcgccGCGCg -3'
miRNA:   3'- -UCGaCGCGUUCC----UCUGGUgGCu---CGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.