miRNA display CGI


Results 1 - 20 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19461 3' -59.9 NC_004685.1 + 17222 0.66 0.546833
Target:  5'- -gCAGCaCGaGCAGC-GCGCGUGGcgGGAg -3'
miRNA:   3'- caGUUG-GC-CGUCGcCGCGCGCUa-CCU- -5'
19461 3' -59.9 NC_004685.1 + 20334 0.66 0.516296
Target:  5'- --gGGCCGGaCGGCGGCG-GCGAa--- -3'
miRNA:   3'- cagUUGGCC-GUCGCCGCgCGCUaccu -5'
19461 3' -59.9 NC_004685.1 + 22413 0.66 0.516296
Target:  5'- --gGACUGGCgguuGGCGGUGCuGuCGAUGGu -3'
miRNA:   3'- cagUUGGCCG----UCGCCGCG-C-GCUACCu -5'
19461 3' -59.9 NC_004685.1 + 69341 0.66 0.516296
Target:  5'- cGUC-ACCGGCGauuGUGGCGCGCcccuuacccGUGGc -3'
miRNA:   3'- -CAGuUGGCCGU---CGCCGCGCGc--------UACCu -5'
19461 3' -59.9 NC_004685.1 + 13402 0.66 0.516296
Target:  5'- -----gCGGCGGCGGCaaCGCcGGUGGAc -3'
miRNA:   3'- caguugGCCGUCGCCGc-GCG-CUACCU- -5'
19461 3' -59.9 NC_004685.1 + 30464 0.66 0.516296
Target:  5'- -cCAGCCGGCGccgaagccgccGCcaGGCgGCGCG-UGGAg -3'
miRNA:   3'- caGUUGGCCGU-----------CG--CCG-CGCGCuACCU- -5'
19461 3' -59.9 NC_004685.1 + 44734 0.66 0.496323
Target:  5'- --uGugCGGCAcCGGCGUGCccuGGUGGGu -3'
miRNA:   3'- cagUugGCCGUcGCCGCGCG---CUACCU- -5'
19461 3' -59.9 NC_004685.1 + 37644 0.66 0.496323
Target:  5'- gGUC-GCgGGCGGCGGCG---GAUGGAc -3'
miRNA:   3'- -CAGuUGgCCGUCGCCGCgcgCUACCU- -5'
19461 3' -59.9 NC_004685.1 + 10674 0.67 0.486468
Target:  5'- cGUCGugUGGCGG-GGCGCGCa----- -3'
miRNA:   3'- -CAGUugGCCGUCgCCGCGCGcuaccu -5'
19461 3' -59.9 NC_004685.1 + 37505 0.67 0.486468
Target:  5'- -cCAGCCcuGGCGagguGUGGCGCGCuGUGGu -3'
miRNA:   3'- caGUUGG--CCGU----CGCCGCGCGcUACCu -5'
19461 3' -59.9 NC_004685.1 + 19293 0.67 0.486468
Target:  5'- cGUCgAGCUGGuCGGC-GCGUGCGAUGu- -3'
miRNA:   3'- -CAG-UUGGCC-GUCGcCGCGCGCUACcu -5'
19461 3' -59.9 NC_004685.1 + 36740 0.67 0.467043
Target:  5'- cUCAAacccgUCGGCGGUGGCGUugacgGCGAUGa- -3'
miRNA:   3'- cAGUU-----GGCCGUCGCCGCG-----CGCUACcu -5'
19461 3' -59.9 NC_004685.1 + 30069 0.67 0.457482
Target:  5'- cGUCGACC-GCGGCGGCcagcuucaGCGCGGccacccacuccuUGGu -3'
miRNA:   3'- -CAGUUGGcCGUCGCCG--------CGCGCU------------ACCu -5'
19461 3' -59.9 NC_004685.1 + 12549 0.67 0.448027
Target:  5'- cGUCGACUGGuCAGCugaccgGGCGCucgGCGgcGGGc -3'
miRNA:   3'- -CAGUUGGCC-GUCG------CCGCG---CGCuaCCU- -5'
19461 3' -59.9 NC_004685.1 + 64673 0.67 0.448027
Target:  5'- gGUCGAUagUGGCGGaaacuaggauucCGGCGCGCGAcGGc -3'
miRNA:   3'- -CAGUUG--GCCGUC------------GCCGCGCGCUaCCu -5'
19461 3' -59.9 NC_004685.1 + 16745 0.67 0.448027
Target:  5'- ----uCCGGCGGUGGCGUGUGAc--- -3'
miRNA:   3'- caguuGGCCGUCGCCGCGCGCUaccu -5'
19461 3' -59.9 NC_004685.1 + 1566 0.67 0.438681
Target:  5'- cGUCGGCC--UAGCGGUGCGCGAc--- -3'
miRNA:   3'- -CAGUUGGccGUCGCCGCGCGCUaccu -5'
19461 3' -59.9 NC_004685.1 + 33834 0.68 0.429447
Target:  5'- cGUCucGCCgGGCAGCGGCGgGaUGAUcGGc -3'
miRNA:   3'- -CAGu-UGG-CCGUCGCCGCgC-GCUA-CCu -5'
19461 3' -59.9 NC_004685.1 + 31250 0.68 0.420329
Target:  5'- -cCGGCgCGGCGGCGaGCGuCGCGAcgaacuUGGu -3'
miRNA:   3'- caGUUG-GCCGUCGC-CGC-GCGCU------ACCu -5'
19461 3' -59.9 NC_004685.1 + 67489 0.68 0.411329
Target:  5'- cUCGGCCaGCucgcacucGCGGUGCGCGGUGc- -3'
miRNA:   3'- cAGUUGGcCGu-------CGCCGCGCGCUACcu -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.