miRNA display CGI


Results 1 - 20 of 20 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19464 3' -57.5 NC_004685.1 + 61727 0.66 0.685126
Target:  5'- cGGUGcUCCUCGcagaugGCCuUGGCUCGguCCAGc -3'
miRNA:   3'- uCCGCaAGGAGC------UGG-ACUGAGC--GGUC- -5'
19464 3' -57.5 NC_004685.1 + 14463 0.66 0.674558
Target:  5'- gAGuCGUccagCUUCGACCUGGC-CGCCuGg -3'
miRNA:   3'- -UCcGCAa---GGAGCUGGACUGaGCGGuC- -5'
19464 3' -57.5 NC_004685.1 + 46340 0.66 0.663953
Target:  5'- cGGGC--UCCUCGGCCUcaGACU--CCAGg -3'
miRNA:   3'- -UCCGcaAGGAGCUGGA--CUGAgcGGUC- -5'
19464 3' -57.5 NC_004685.1 + 11978 0.66 0.65332
Target:  5'- cGGCGUgcucgaaggCgCUCGACgUGGggcagaugcuCUCGCCGGa -3'
miRNA:   3'- uCCGCAa--------G-GAGCUGgACU----------GAGCGGUC- -5'
19464 3' -57.5 NC_004685.1 + 68466 0.66 0.642668
Target:  5'- uGGGCGgccgccagUCCgaugCGGCCcccUGGCccCGCCAGu -3'
miRNA:   3'- -UCCGCa-------AGGa---GCUGG---ACUGa-GCGGUC- -5'
19464 3' -57.5 NC_004685.1 + 67797 0.67 0.610695
Target:  5'- cGGGCacggCCgCGGCCUGACcgaCGCCAu -3'
miRNA:   3'- -UCCGcaa-GGaGCUGGACUGa--GCGGUc -5'
19464 3' -57.5 NC_004685.1 + 65526 0.67 0.600061
Target:  5'- cGGGCG-UCgUCGGCaa-GCUCGCCGa -3'
miRNA:   3'- -UCCGCaAGgAGCUGgacUGAGCGGUc -5'
19464 3' -57.5 NC_004685.1 + 44298 0.68 0.557859
Target:  5'- aAGGC--UCCgugCGGCCUGGucaUCGCCAa -3'
miRNA:   3'- -UCCGcaAGGa--GCUGGACUg--AGCGGUc -5'
19464 3' -57.5 NC_004685.1 + 29314 0.68 0.537064
Target:  5'- cAGGCG-UCCUCGAggaUGAUcUGCCGGa -3'
miRNA:   3'- -UCCGCaAGGAGCUgg-ACUGaGCGGUC- -5'
19464 3' -57.5 NC_004685.1 + 17172 0.68 0.53603
Target:  5'- cGGCGUUCgCcgCGgcgcugcGCCUGAUccagaUCGCCAGa -3'
miRNA:   3'- uCCGCAAG-Ga-GC-------UGGACUG-----AGCGGUC- -5'
19464 3' -57.5 NC_004685.1 + 34169 0.68 0.53603
Target:  5'- cGGCGUgg-UCGACCUGACcuccguggcaccgUCGCCu- -3'
miRNA:   3'- uCCGCAaggAGCUGGACUG-------------AGCGGuc -5'
19464 3' -57.5 NC_004685.1 + 7205 0.68 0.53603
Target:  5'- uGGCGUUCCUgucaccCGACCagcuUGACgagcugaUCGCCGa -3'
miRNA:   3'- uCCGCAAGGA------GCUGG----ACUG-------AGCGGUc -5'
19464 3' -57.5 NC_004685.1 + 2600 0.69 0.496344
Target:  5'- aGGGCGgcauacCgCUCGGCCUG-CUCGgCAGc -3'
miRNA:   3'- -UCCGCaa----G-GAGCUGGACuGAGCgGUC- -5'
19464 3' -57.5 NC_004685.1 + 46831 0.69 0.493345
Target:  5'- cGGGCGccgacaCCUCGgucuucACCUGcggauaggugcccaGCUCGCCAGg -3'
miRNA:   3'- -UCCGCaa----GGAGC------UGGAC--------------UGAGCGGUC- -5'
19464 3' -57.5 NC_004685.1 + 58910 0.7 0.40148
Target:  5'- -cGCGcagCCUCGACUccGACUCGCCGa -3'
miRNA:   3'- ucCGCaa-GGAGCUGGa-CUGAGCGGUc -5'
19464 3' -57.5 NC_004685.1 + 38849 0.71 0.366888
Target:  5'- uGGCG-UCCUCGACCUGccACUgaGCCu- -3'
miRNA:   3'- uCCGCaAGGAGCUGGAC--UGAg-CGGuc -5'
19464 3' -57.5 NC_004685.1 + 29794 0.73 0.282746
Target:  5'- aAGGUGUUCUUCGAg--GACaUCGCCGGg -3'
miRNA:   3'- -UCCGCAAGGAGCUggaCUG-AGCGGUC- -5'
19464 3' -57.5 NC_004685.1 + 40146 0.76 0.174369
Target:  5'- cGGCGaugUCCUCGGCCauGCUCGgCCAGa -3'
miRNA:   3'- uCCGCa--AGGAGCUGGacUGAGC-GGUC- -5'
19464 3' -57.5 NC_004685.1 + 20059 0.83 0.063465
Target:  5'- cGGGCGUUCCUCGACCaccUGGCguUCGUCGGc -3'
miRNA:   3'- -UCCGCAAGGAGCUGG---ACUG--AGCGGUC- -5'
19464 3' -57.5 NC_004685.1 + 29497 1.09 0.000824
Target:  5'- aAGGCGUUCCUCGACCUGACUCGCCAGg -3'
miRNA:   3'- -UCCGCAAGGAGCUGGACUGAGCGGUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.