miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1947 3' -52.6 NC_001347.2 + 166131 0.66 0.993681
Target:  5'- ---cCGCuuCGG-CCGCcGcCGCAACg -3'
miRNA:   3'- caaaGCGuuGCCuGGCGaCaGCGUUG- -5'
1947 3' -52.6 NC_001347.2 + 166534 0.66 0.993681
Target:  5'- --aUCGCGGCGaACCaGCUcgCGCAACu -3'
miRNA:   3'- caaAGCGUUGCcUGG-CGAcaGCGUUG- -5'
1947 3' -52.6 NC_001347.2 + 193178 0.66 0.993681
Target:  5'- ---gCGCGuCGG-CCGC-GUCGCAAa -3'
miRNA:   3'- caaaGCGUuGCCuGGCGaCAGCGUUg -5'
1947 3' -52.6 NC_001347.2 + 125022 0.66 0.993681
Target:  5'- --cUCGacCGGCGG-CUGCUGUUGCAc- -3'
miRNA:   3'- caaAGC--GUUGCCuGGCGACAGCGUug -5'
1947 3' -52.6 NC_001347.2 + 155268 0.66 0.993681
Target:  5'- --gUCGUuGCGGACUGCacaagGUaGCGGCg -3'
miRNA:   3'- caaAGCGuUGCCUGGCGa----CAgCGUUG- -5'
1947 3' -52.6 NC_001347.2 + 193069 0.66 0.993128
Target:  5'- --aUCGUcGCGGACUGCcggcauguccggccGUCGCAAg -3'
miRNA:   3'- caaAGCGuUGCCUGGCGa-------------CAGCGUUg -5'
1947 3' -52.6 NC_001347.2 + 16906 0.66 0.992738
Target:  5'- -gUUCGaCAGCGGcguagACCGCgacuacgCGCGGCa -3'
miRNA:   3'- caAAGC-GUUGCC-----UGGCGaca----GCGUUG- -5'
1947 3' -52.6 NC_001347.2 + 105311 0.66 0.992738
Target:  5'- ----aGUAGCGG-CCGUUGUgcccauucCGCAACg -3'
miRNA:   3'- caaagCGUUGCCuGGCGACA--------GCGUUG- -5'
1947 3' -52.6 NC_001347.2 + 173535 0.66 0.992738
Target:  5'- --gUCGCGugGcGGCgGCggugGUgGCGGCa -3'
miRNA:   3'- caaAGCGUugC-CUGgCGa---CAgCGUUG- -5'
1947 3' -52.6 NC_001347.2 + 31953 0.66 0.992738
Target:  5'- --aUgGCGAUGGuGCUGCUGUUGgGAUa -3'
miRNA:   3'- caaAgCGUUGCC-UGGCGACAGCgUUG- -5'
1947 3' -52.6 NC_001347.2 + 34134 0.66 0.991687
Target:  5'- --aUCGCGACaGACaucccccugcaCGUccaUGUCGCGACa -3'
miRNA:   3'- caaAGCGUUGcCUG-----------GCG---ACAGCGUUG- -5'
1947 3' -52.6 NC_001347.2 + 17693 0.66 0.991687
Target:  5'- ---gCGCAGCGcgcuuuauccGACuCGCUGUCGaGACg -3'
miRNA:   3'- caaaGCGUUGC----------CUG-GCGACAGCgUUG- -5'
1947 3' -52.6 NC_001347.2 + 16699 0.66 0.991687
Target:  5'- --gUCGCAucUGGACCGCUcGcCGCcccuGCa -3'
miRNA:   3'- caaAGCGUu-GCCUGGCGA-CaGCGu---UG- -5'
1947 3' -52.6 NC_001347.2 + 170406 0.66 0.991687
Target:  5'- uGUggCGCGagAUGGAcaCCG-UGUCGCGGCa -3'
miRNA:   3'- -CAaaGCGU--UGCCU--GGCgACAGCGUUG- -5'
1947 3' -52.6 NC_001347.2 + 116703 0.66 0.991687
Target:  5'- --cUCGCGACGuGagggaucccaGCCGCUG-CGCAc- -3'
miRNA:   3'- caaAGCGUUGC-C----------UGGCGACaGCGUug -5'
1947 3' -52.6 NC_001347.2 + 197615 0.66 0.989225
Target:  5'- aGUgcgCGCcGCcGACuCGCUGcCGCAGCu -3'
miRNA:   3'- -CAaa-GCGuUGcCUG-GCGACaGCGUUG- -5'
1947 3' -52.6 NC_001347.2 + 76615 0.66 0.989225
Target:  5'- --cUCGCAgGCGGcgGCUGCgGcCGCGGCg -3'
miRNA:   3'- caaAGCGU-UGCC--UGGCGaCaGCGUUG- -5'
1947 3' -52.6 NC_001347.2 + 196875 0.67 0.987798
Target:  5'- ---gUGCAGCGGAuucccgacuaCCGCagcgUGUCGCuGCg -3'
miRNA:   3'- caaaGCGUUGCCU----------GGCG----ACAGCGuUG- -5'
1947 3' -52.6 NC_001347.2 + 165110 0.67 0.987798
Target:  5'- ---gUGCGGCGGuggUCGUUGUCGCuGCc -3'
miRNA:   3'- caaaGCGUUGCCu--GGCGACAGCGuUG- -5'
1947 3' -52.6 NC_001347.2 + 22173 0.67 0.987798
Target:  5'- --gUCGcCGACGGucaccaucguGCCGCUccaUCGCAGCc -3'
miRNA:   3'- caaAGC-GUUGCC----------UGGCGAc--AGCGUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.