miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1947 5' -61.4 NC_001347.2 + 188163 0.66 0.807251
Target:  5'- ----gGCCGCCGaaGCCC-ACGCUGc -3'
miRNA:   3'- cacaaUGGCGGCggCGGGcUGCGGCu -5'
1947 5' -61.4 NC_001347.2 + 156998 0.66 0.807251
Target:  5'- -aGUcuggGCCGUgGCUGCCCGcGCGCUu- -3'
miRNA:   3'- caCAa---UGGCGgCGGCGGGC-UGCGGcu -5'
1947 5' -61.4 NC_001347.2 + 175322 0.66 0.807251
Target:  5'- -aGUUaccACCGUCGCCGUcacugccaCCGAcauggagcccaCGCCGAu -3'
miRNA:   3'- caCAA---UGGCGGCGGCG--------GGCU-----------GCGGCU- -5'
1947 5' -61.4 NC_001347.2 + 115032 0.66 0.807251
Target:  5'- -cGUcACCGUCG-CGUCCGACGCgaCGGu -3'
miRNA:   3'- caCAaUGGCGGCgGCGGGCUGCG--GCU- -5'
1947 5' -61.4 NC_001347.2 + 132668 0.66 0.807251
Target:  5'- cGUcUUGCCGUCGuCCGucaCCCGgGCGUCGAg -3'
miRNA:   3'- -CAcAAUGGCGGC-GGC---GGGC-UGCGGCU- -5'
1947 5' -61.4 NC_001347.2 + 135601 0.66 0.798938
Target:  5'- ---cUACCGUCGUCGUcggCCGAcCGCCGc -3'
miRNA:   3'- cacaAUGGCGGCGGCG---GGCU-GCGGCu -5'
1947 5' -61.4 NC_001347.2 + 165125 0.66 0.798938
Target:  5'- uUGUcGCUGCCGUguccgCGCUuucucggaCGACGCCGGu -3'
miRNA:   3'- cACAaUGGCGGCG-----GCGG--------GCUGCGGCU- -5'
1947 5' -61.4 NC_001347.2 + 65020 0.66 0.798938
Target:  5'- -cGUUACCGucCCGUuaCGCCgGAgGCCGc -3'
miRNA:   3'- caCAAUGGC--GGCG--GCGGgCUgCGGCu -5'
1947 5' -61.4 NC_001347.2 + 222812 0.66 0.791344
Target:  5'- cUGUcuUCGCCGCCGCagcuguagcaguuaaCGuCGCCGGc -3'
miRNA:   3'- cACAauGGCGGCGGCGg--------------GCuGCGGCU- -5'
1947 5' -61.4 NC_001347.2 + 94833 0.66 0.790494
Target:  5'- cUG-UACaCGCCGCUGagcaCGGCGCUGAu -3'
miRNA:   3'- cACaAUG-GCGGCGGCgg--GCUGCGGCU- -5'
1947 5' -61.4 NC_001347.2 + 185118 0.66 0.790494
Target:  5'- -gGUUGCUGuuGCgGCgCGAgcagcCGCCGGg -3'
miRNA:   3'- caCAAUGGCggCGgCGgGCU-----GCGGCU- -5'
1947 5' -61.4 NC_001347.2 + 189974 0.66 0.790494
Target:  5'- ---gUAUCGaaugCGCCGCCUGugGCCu- -3'
miRNA:   3'- cacaAUGGCg---GCGGCGGGCugCGGcu -5'
1947 5' -61.4 NC_001347.2 + 192121 0.66 0.790494
Target:  5'- -gGUcGCCGCCaCCGCCguCGuuGCCGGu -3'
miRNA:   3'- caCAaUGGCGGcGGCGG--GCugCGGCU- -5'
1947 5' -61.4 NC_001347.2 + 81774 0.66 0.781924
Target:  5'- ----aGCCGCCG-CGUCCaACGCCGu -3'
miRNA:   3'- cacaaUGGCGGCgGCGGGcUGCGGCu -5'
1947 5' -61.4 NC_001347.2 + 1899 0.66 0.781924
Target:  5'- cUG-UGCUGCgGCUGgCUGGCGCUGGg -3'
miRNA:   3'- cACaAUGGCGgCGGCgGGCUGCGGCU- -5'
1947 5' -61.4 NC_001347.2 + 112077 0.66 0.781924
Target:  5'- -cGUUGCCGCCuCagaaCCCGACGCgGu -3'
miRNA:   3'- caCAAUGGCGGcGgc--GGGCUGCGgCu -5'
1947 5' -61.4 NC_001347.2 + 114914 0.66 0.781924
Target:  5'- ----gGCCGUacugGCCGCCCGcgcccuucauAUGCCGAc -3'
miRNA:   3'- cacaaUGGCGg---CGGCGGGC----------UGCGGCU- -5'
1947 5' -61.4 NC_001347.2 + 2602 0.66 0.781924
Target:  5'- uGUGgaagacUACCuGCaagaCGCCCGACGCCGc -3'
miRNA:   3'- -CACa-----AUGG-CGgcg-GCGGGCUGCGGCu -5'
1947 5' -61.4 NC_001347.2 + 165616 0.66 0.781924
Target:  5'- cUGUagACCGgCaGCCGCCCGcCGgCGGg -3'
miRNA:   3'- cACAa-UGGCgG-CGGCGGGCuGCgGCU- -5'
1947 5' -61.4 NC_001347.2 + 167433 0.66 0.773238
Target:  5'- cGUGgaucgaUGCUGCuccaaaaucaacCGCCGCCgGugGUCGAa -3'
miRNA:   3'- -CACa-----AUGGCG------------GCGGCGGgCugCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.