miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19475 3' -63.1 NC_004685.1 + 6749 0.66 0.394927
Target:  5'- cGGauCGGCC-GGGCAugucgccgucgaagcACUUcgcggccaccuacaCCCCGCCCc -3'
miRNA:   3'- -CC--GCCGGaCCCGU---------------UGAA--------------GGGGCGGGa -5'
19475 3' -63.1 NC_004685.1 + 152 0.66 0.394075
Target:  5'- gGGUGGCC-GGGgAGCUgcucggCuuGCCCUu -3'
miRNA:   3'- -CCGCCGGaCCCgUUGAag----GggCGGGA- -5'
19475 3' -63.1 NC_004685.1 + 27698 0.66 0.385617
Target:  5'- aGCGGCCgccGGGCcacaccuCUUCCacgcggCCGUCCUu -3'
miRNA:   3'- cCGCCGGa--CCCGuu-----GAAGG------GGCGGGA- -5'
19475 3' -63.1 NC_004685.1 + 49340 0.66 0.37728
Target:  5'- cGCGGC--GGGCAGCgguUCgCCGCCg- -3'
miRNA:   3'- cCGCCGgaCCCGUUGa--AGgGGCGGga -5'
19475 3' -63.1 NC_004685.1 + 68467 0.66 0.37728
Target:  5'- gGGCGGCCgccaguccgaUGcGGCcccCUggCCCCGCCa- -3'
miRNA:   3'- -CCGCCGG----------AC-CCGuu-GAa-GGGGCGGga -5'
19475 3' -63.1 NC_004685.1 + 28938 0.66 0.37728
Target:  5'- cGGCGGCaaccuUGGcGC-GCUcaCCCCGCUCg -3'
miRNA:   3'- -CCGCCGg----ACC-CGuUGAa-GGGGCGGGa -5'
19475 3' -63.1 NC_004685.1 + 32283 0.66 0.368251
Target:  5'- gGGCGGuCCUGGuggcgcggcgaccGCAGCggCCCUGCa-- -3'
miRNA:   3'- -CCGCC-GGACC-------------CGUUGaaGGGGCGgga -5'
19475 3' -63.1 NC_004685.1 + 50327 0.66 0.360975
Target:  5'- gGGCuGCCgGGGcCGACUUCgCCGCg-- -3'
miRNA:   3'- -CCGcCGGaCCC-GUUGAAGgGGCGgga -5'
19475 3' -63.1 NC_004685.1 + 32211 0.67 0.353008
Target:  5'- cGGCGGCUucaaggUGGGCGGCggcauucucggUUCCgCGCUg- -3'
miRNA:   3'- -CCGCCGG------ACCCGUUG-----------AAGGgGCGGga -5'
19475 3' -63.1 NC_004685.1 + 25105 0.67 0.33745
Target:  5'- aGGCucaGCCUGGGCAgugACUggCCCUacaggaaaGCCCc -3'
miRNA:   3'- -CCGc--CGGACCCGU---UGAa-GGGG--------CGGGa -5'
19475 3' -63.1 NC_004685.1 + 12960 0.67 0.329861
Target:  5'- aGCGauccucucGCCUGGGCAGCga-CCCGaucCCCa -3'
miRNA:   3'- cCGC--------CGGACCCGUUGaagGGGC---GGGa -5'
19475 3' -63.1 NC_004685.1 + 58094 0.67 0.322398
Target:  5'- uGCGGCCUGcGCGGC-UCgCCGCgaCCUg -3'
miRNA:   3'- cCGCCGGACcCGUUGaAGgGGCG--GGA- -5'
19475 3' -63.1 NC_004685.1 + 41855 0.67 0.315062
Target:  5'- cGGCGGCC-GGGUG--UUCCgCGCCg- -3'
miRNA:   3'- -CCGCCGGaCCCGUugAAGGgGCGGga -5'
19475 3' -63.1 NC_004685.1 + 37479 0.67 0.315062
Target:  5'- cGGCGGCgucgaCUGGGaGAa---CCCGCCCa -3'
miRNA:   3'- -CCGCCG-----GACCCgUUgaagGGGCGGGa -5'
19475 3' -63.1 NC_004685.1 + 69594 0.67 0.314335
Target:  5'- aGCGGCCaacGGGCGcgcguccacacggGCgcgCgCCCGCCCc -3'
miRNA:   3'- cCGCCGGa--CCCGU-------------UGaa-G-GGGCGGGa -5'
19475 3' -63.1 NC_004685.1 + 42470 0.68 0.282946
Target:  5'- -aCGGCCUGGGCAgcggcaccagcuucaGCUUCacggcagCCGCCg- -3'
miRNA:   3'- ccGCCGGACCCGU---------------UGAAGg------GGCGGga -5'
19475 3' -63.1 NC_004685.1 + 14179 0.68 0.269812
Target:  5'- cGC-GCCUGGGCcugcacauuuacgucGGCa-CCCCGCCCa -3'
miRNA:   3'- cCGcCGGACCCG---------------UUGaaGGGGCGGGa -5'
19475 3' -63.1 NC_004685.1 + 56988 0.69 0.248619
Target:  5'- cGGCGGCUcaggcuugcGGGCgAACUUCUCUgcgGCCCg -3'
miRNA:   3'- -CCGCCGGa--------CCCG-UUGAAGGGG---CGGGa -5'
19475 3' -63.1 NC_004685.1 + 25323 0.69 0.242653
Target:  5'- gGGUGGCCuUGGcGCAucgUCUugCCGCCCUc -3'
miRNA:   3'- -CCGCCGG-ACC-CGUugaAGG--GGCGGGA- -5'
19475 3' -63.1 NC_004685.1 + 51872 0.7 0.204171
Target:  5'- aGGcCGGCCa--GCAGCUUgCCCGCCUg -3'
miRNA:   3'- -CC-GCCGGaccCGUUGAAgGGGCGGGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.