miRNA display CGI


Results 1 - 20 of 83 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1948 3' -59.9 NC_001347.2 + 152737 0.66 0.875143
Target:  5'- gCGCCGCCGUgagcaucugcgugauGCaGUCGcAGGGGAugugcACGuCg -3'
miRNA:   3'- -GCGGCGGCG---------------CG-CAGC-UCCUCU-----UGCuG- -5'
1948 3' -59.9 NC_001347.2 + 69633 0.66 0.872413
Target:  5'- cCGCCGCCcaacuGCGCGUCccAGGuAGGugGuCc -3'
miRNA:   3'- -GCGGCGG-----CGCGCAGc-UCC-UCUugCuG- -5'
1948 3' -59.9 NC_001347.2 + 77320 0.66 0.872413
Target:  5'- gGCCGCgGCGUGgaugaCGAGGccgucauCGACa -3'
miRNA:   3'- gCGGCGgCGCGCa----GCUCCucuu---GCUG- -5'
1948 3' -59.9 NC_001347.2 + 113189 0.66 0.872413
Target:  5'- aGCCGCCG-GCGUgGcGGccuGAcuGCGGCu -3'
miRNA:   3'- gCGGCGGCgCGCAgCuCCu--CU--UGCUG- -5'
1948 3' -59.9 NC_001347.2 + 135461 0.66 0.872413
Target:  5'- aGCCGCCGCGagacccggaagcCGUCGcGGu---CGACc -3'
miRNA:   3'- gCGGCGGCGC------------GCAGCuCCucuuGCUG- -5'
1948 3' -59.9 NC_001347.2 + 1072 0.66 0.872413
Target:  5'- gGCCGCCGgGCGcCccuccGAGuAGCGGCa -3'
miRNA:   3'- gCGGCGGCgCGCaGcuc--CUC-UUGCUG- -5'
1948 3' -59.9 NC_001347.2 + 39928 0.66 0.865456
Target:  5'- gGCgacuaGuuGCGUGUgGugcGGAGGACGGCg -3'
miRNA:   3'- gCGg----CggCGCGCAgCu--CCUCUUGCUG- -5'
1948 3' -59.9 NC_001347.2 + 19006 0.66 0.86475
Target:  5'- aCGCUGCCgGCGCuacaGGGGGGAuuaugggaggauaACGAUg -3'
miRNA:   3'- -GCGGCGG-CGCGcag-CUCCUCU-------------UGCUG- -5'
1948 3' -59.9 NC_001347.2 + 144586 0.66 0.858314
Target:  5'- gGCgGCCGgGC-UCGuGGAGGA-GGCa -3'
miRNA:   3'- gCGgCGGCgCGcAGCuCCUCUUgCUG- -5'
1948 3' -59.9 NC_001347.2 + 21424 0.66 0.858314
Target:  5'- uGCCGCCaccgguggccgaGCuauGCGagCGGGGAcgGGACGACg -3'
miRNA:   3'- gCGGCGG------------CG---CGCa-GCUCCU--CUUGCUG- -5'
1948 3' -59.9 NC_001347.2 + 127589 0.66 0.858314
Target:  5'- aCGCgGCCgGCGCGccuuUCGAuGAcGACGACu -3'
miRNA:   3'- -GCGgCGG-CGCGC----AGCUcCUcUUGCUG- -5'
1948 3' -59.9 NC_001347.2 + 169892 0.66 0.858314
Target:  5'- aGCCGCaGCGCGgaaacCGAgacGGAGGAaucguCGGCa -3'
miRNA:   3'- gCGGCGgCGCGCa----GCU---CCUCUU-----GCUG- -5'
1948 3' -59.9 NC_001347.2 + 157211 0.66 0.858314
Target:  5'- gGCCGCgGUGCGcUGcagccGGAGGaaGCGGCg -3'
miRNA:   3'- gCGGCGgCGCGCaGCu----CCUCU--UGCUG- -5'
1948 3' -59.9 NC_001347.2 + 225587 0.66 0.858314
Target:  5'- aGCCGCC-CGUGgCcGGGAGAA-GACg -3'
miRNA:   3'- gCGGCGGcGCGCaGcUCCUCUUgCUG- -5'
1948 3' -59.9 NC_001347.2 + 2144 0.66 0.850992
Target:  5'- gCGCaCGCgGUG-GUCGGGGcGGAcGCGGCa -3'
miRNA:   3'- -GCG-GCGgCGCgCAGCUCC-UCU-UGCUG- -5'
1948 3' -59.9 NC_001347.2 + 40577 0.66 0.850992
Target:  5'- uCGgCGCUGCGCuuGUCGGGGGuuuucGAGCGu- -3'
miRNA:   3'- -GCgGCGGCGCG--CAGCUCCU-----CUUGCug -5'
1948 3' -59.9 NC_001347.2 + 174741 0.66 0.85025
Target:  5'- gCGCCGCUGCGCGaagaacUGGGcuauguccgcuucGAGAccgGCGGCg -3'
miRNA:   3'- -GCGGCGGCGCGCa-----GCUC-------------CUCU---UGCUG- -5'
1948 3' -59.9 NC_001347.2 + 152384 0.66 0.843495
Target:  5'- gCGUCGCCuGCGaCGgCGGguGGAGAugagGCGGCg -3'
miRNA:   3'- -GCGGCGG-CGC-GCaGCU--CCUCU----UGCUG- -5'
1948 3' -59.9 NC_001347.2 + 228727 0.66 0.843495
Target:  5'- -aCCGCCGCgGCGgauuuccgCGcGGGGGACGGg -3'
miRNA:   3'- gcGGCGGCG-CGCa-------GCuCCUCUUGCUg -5'
1948 3' -59.9 NC_001347.2 + 184505 0.66 0.843495
Target:  5'- gGCCGCCGCGC--CGuGuGAGAGuuccagggccgcCGACa -3'
miRNA:   3'- gCGGCGGCGCGcaGCuC-CUCUU------------GCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.