miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1948 5' -51.2 NC_001347.2 + 128857 0.66 0.998852
Target:  5'- aCGCCGcgcccGUCGCg--CACGGCGc -3'
miRNA:   3'- cGCGGCaauaaUAGCGucaGUGCCGC- -5'
1948 5' -51.2 NC_001347.2 + 978 0.66 0.998852
Target:  5'- uGUGCCGaUGggagCGCcGUCACaGCGg -3'
miRNA:   3'- -CGCGGCaAUaauaGCGuCAGUGcCGC- -5'
1948 5' -51.2 NC_001347.2 + 126706 0.66 0.998808
Target:  5'- gGCGCCcgaag---CGCAGUgCACGcGCGa -3'
miRNA:   3'- -CGCGGcaauaauaGCGUCA-GUGC-CGC- -5'
1948 5' -51.2 NC_001347.2 + 902 0.66 0.998693
Target:  5'- cGCGCCccccgccccuugGUCGCGGcCGCGGgGc -3'
miRNA:   3'- -CGCGGcaauaa------UAGCGUCaGUGCCgC- -5'
1948 5' -51.2 NC_001347.2 + 134885 0.66 0.998618
Target:  5'- aCGCCGggUGggacgGUCGUGGUCuccuCGGCc -3'
miRNA:   3'- cGCGGCa-AUaa---UAGCGUCAGu---GCCGc -5'
1948 5' -51.2 NC_001347.2 + 6222 0.66 0.998618
Target:  5'- aGCGCCGgguacUGUgg-CGCAGUCGuuuccaccaGGUGa -3'
miRNA:   3'- -CGCGGCa----AUAauaGCGUCAGUg--------CCGC- -5'
1948 5' -51.2 NC_001347.2 + 192175 0.66 0.998541
Target:  5'- cCGCCGUcuccggaugaGCGGcCGCGGCGc -3'
miRNA:   3'- cGCGGCAauaauag---CGUCaGUGCCGC- -5'
1948 5' -51.2 NC_001347.2 + 228706 0.66 0.998345
Target:  5'- uGCGCUGUcggcccaGUCGCcaccGcCGCGGCGg -3'
miRNA:   3'- -CGCGGCAauaa---UAGCGu---CaGUGCCGC- -5'
1948 5' -51.2 NC_001347.2 + 150583 0.66 0.998255
Target:  5'- aGCGUCGgcuccggcaGUAGUgGCGGCGu -3'
miRNA:   3'- -CGCGGCaauaauag-CGUCAgUGCCGC- -5'
1948 5' -51.2 NC_001347.2 + 40624 0.66 0.998028
Target:  5'- aUGCCGggg-UGUUGCGGagACGGgGg -3'
miRNA:   3'- cGCGGCaauaAUAGCGUCagUGCCgC- -5'
1948 5' -51.2 NC_001347.2 + 1197 0.66 0.998028
Target:  5'- gGCGCCGU----GUgGCg--CGCGGCGu -3'
miRNA:   3'- -CGCGGCAauaaUAgCGucaGUGCCGC- -5'
1948 5' -51.2 NC_001347.2 + 38752 0.66 0.997923
Target:  5'- aGCGCCGgcugaggcaGCAgcGUCGCGcGCGg -3'
miRNA:   3'- -CGCGGCaauaauag-CGU--CAGUGC-CGC- -5'
1948 5' -51.2 NC_001347.2 + 67513 0.66 0.997888
Target:  5'- gGUGCCGgcggccaCGUccGUCACGGCGu -3'
miRNA:   3'- -CGCGGCaauaauaGCGu-CAGUGCCGC- -5'
1948 5' -51.2 NC_001347.2 + 229760 0.66 0.997661
Target:  5'- cGCgGCCGUUAUUuccccCGCGGUCcccAgGGCc -3'
miRNA:   3'- -CG-CGGCAAUAAua---GCGUCAG---UgCCGc -5'
1948 5' -51.2 NC_001347.2 + 281 0.66 0.997661
Target:  5'- cGCgGCCGUUAUUuccccCGCGGUCcccAgGGCc -3'
miRNA:   3'- -CG-CGGCAAUAAua---GCGUCAG---UgCCGc -5'
1948 5' -51.2 NC_001347.2 + 226235 0.66 0.997661
Target:  5'- cGCGCC-----UGUCGCGauccUCAUGGCGa -3'
miRNA:   3'- -CGCGGcaauaAUAGCGUc---AGUGCCGC- -5'
1948 5' -51.2 NC_001347.2 + 80510 0.66 0.997284
Target:  5'- aCGCCGUggaagggcgCGCAGUCaaucaccccagcguGCGGCc -3'
miRNA:   3'- cGCGGCAauaaua---GCGUCAG--------------UGCCGc -5'
1948 5' -51.2 NC_001347.2 + 229512 0.67 0.996755
Target:  5'- gGCGgUGUUuugggugUGUCGgGG-CGCGGCGg -3'
miRNA:   3'- -CGCgGCAAua-----AUAGCgUCaGUGCCGC- -5'
1948 5' -51.2 NC_001347.2 + 210143 0.67 0.996755
Target:  5'- aGCGCCGUcuUUcgUGCcGUCGCcGCa -3'
miRNA:   3'- -CGCGGCAauAAuaGCGuCAGUGcCGc -5'
1948 5' -51.2 NC_001347.2 + 185553 0.67 0.996755
Target:  5'- -gGCCGUcGgcGUcCGCAGUCG-GGCGa -3'
miRNA:   3'- cgCGGCAaUaaUA-GCGUCAGUgCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.