miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19481 3' -58.1 NC_004685.1 + 14529 0.66 0.650213
Target:  5'- cGCGCCGCGCuGGU-GC--UCGACAUg -3'
miRNA:   3'- cCGUGGCGCGcCUAgCGgaAGCUGUA- -5'
19481 3' -58.1 NC_004685.1 + 42666 0.66 0.649151
Target:  5'- aGGCACCGgaucagcCGCuacGGucguGUCGCCgUCGGCAg -3'
miRNA:   3'- -CCGUGGC-------GCG---CC----UAGCGGaAGCUGUa -5'
19481 3' -58.1 NC_004685.1 + 45212 0.66 0.645965
Target:  5'- aGGuCGUCGCGCGGGUUGCCguccucagcgaaCGGCGa -3'
miRNA:   3'- -CC-GUGGCGCGCCUAGCGGaa----------GCUGUa -5'
19481 3' -58.1 NC_004685.1 + 38552 0.66 0.639588
Target:  5'- cGGCGCUaucuCGUGGAUCGgCUggGGCAUc -3'
miRNA:   3'- -CCGUGGc---GCGCCUAGCgGAagCUGUA- -5'
19481 3' -58.1 NC_004685.1 + 1510 0.66 0.639588
Target:  5'- uGGCcCCGCaugaggugGUGGAUgGCCagUUCGGCGa -3'
miRNA:   3'- -CCGuGGCG--------CGCCUAgCGG--AAGCUGUa -5'
19481 3' -58.1 NC_004685.1 + 41587 0.66 0.639588
Target:  5'- aGCuGCUGCGCGGcgaaCGCCUgcugcagcUCGGCGUc -3'
miRNA:   3'- cCG-UGGCGCGCCua--GCGGA--------AGCUGUA- -5'
19481 3' -58.1 NC_004685.1 + 59487 0.66 0.639588
Target:  5'- gGGCGgCG-GCGGGUUGCCagCgGACAg -3'
miRNA:   3'- -CCGUgGCgCGCCUAGCGGaaG-CUGUa -5'
19481 3' -58.1 NC_004685.1 + 45738 0.66 0.628956
Target:  5'- --aACgGCaGCGGGUCGCCggggCGGCGc -3'
miRNA:   3'- ccgUGgCG-CGCCUAGCGGaa--GCUGUa -5'
19481 3' -58.1 NC_004685.1 + 11760 0.66 0.625767
Target:  5'- aGCGCCGCGaGGAgcugcacgcagccaUCGCCgaggcgCGGCGc -3'
miRNA:   3'- cCGUGGCGCgCCU--------------AGCGGaa----GCUGUa -5'
19481 3' -58.1 NC_004685.1 + 39212 0.66 0.618327
Target:  5'- cGCGCCGCcugGCGG--CGgCUUCGGCGc -3'
miRNA:   3'- cCGUGGCG---CGCCuaGCgGAAGCUGUa -5'
19481 3' -58.1 NC_004685.1 + 1394 0.66 0.618327
Target:  5'- cGG-ACC-CGCGGcgCGCCUguUCGGCu- -3'
miRNA:   3'- -CCgUGGcGCGCCuaGCGGA--AGCUGua -5'
19481 3' -58.1 NC_004685.1 + 35218 0.66 0.618327
Target:  5'- cGCACgGUGCGGAUggagacgugcggCGCUgucaUCGACGa -3'
miRNA:   3'- cCGUGgCGCGCCUA------------GCGGa---AGCUGUa -5'
19481 3' -58.1 NC_004685.1 + 18807 0.66 0.618327
Target:  5'- cGGCgACCGCGCGcaacCGCCgaCGGCu- -3'
miRNA:   3'- -CCG-UGGCGCGCcua-GCGGaaGCUGua -5'
19481 3' -58.1 NC_004685.1 + 53346 0.66 0.618327
Target:  5'- gGGCACCuccaGCGCGG--CGCCgguggccgCGGCGa -3'
miRNA:   3'- -CCGUGG----CGCGCCuaGCGGaa------GCUGUa -5'
19481 3' -58.1 NC_004685.1 + 67934 0.66 0.607709
Target:  5'- cGCACCGUcugccaucgcccGCGGA-CGCCg-CGGCAa -3'
miRNA:   3'- cCGUGGCG------------CGCCUaGCGGaaGCUGUa -5'
19481 3' -58.1 NC_004685.1 + 24920 0.66 0.607709
Target:  5'- aGGC-CCGCGCGGuGUCGgCgUCGGg-- -3'
miRNA:   3'- -CCGuGGCGCGCC-UAGCgGaAGCUgua -5'
19481 3' -58.1 NC_004685.1 + 20786 0.66 0.597111
Target:  5'- cGGCGauGCGCGGca-GCCccgUCGGCAc -3'
miRNA:   3'- -CCGUggCGCGCCuagCGGa--AGCUGUa -5'
19481 3' -58.1 NC_004685.1 + 30090 0.66 0.597111
Target:  5'- cGCGCCGCGCcGAUCGCaa-CGuACGc -3'
miRNA:   3'- cCGUGGCGCGcCUAGCGgaaGC-UGUa -5'
19481 3' -58.1 NC_004685.1 + 37687 0.66 0.597111
Target:  5'- cGCACCGC-CGGGUCGaCCggcUCGGu-- -3'
miRNA:   3'- cCGUGGCGcGCCUAGC-GGa--AGCUgua -5'
19481 3' -58.1 NC_004685.1 + 56893 0.67 0.586541
Target:  5'- uGCGCCGCauggGCGuGUCGUCUUCGuuCAUg -3'
miRNA:   3'- cCGUGGCG----CGCcUAGCGGAAGCu-GUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.