miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19481 5' -53.8 NC_004685.1 + 34286 0.66 0.891684
Target:  5'- aCCGUGCCGGUCGGgccgGUgAUCcgCGa-- -3'
miRNA:   3'- -GGUACGGCUAGCCg---CAgUAGa-GCacc -5'
19481 5' -53.8 NC_004685.1 + 57727 0.66 0.884538
Target:  5'- cCCGacGCCGcgCuGCGUCGUCgUCGuUGGc -3'
miRNA:   3'- -GGUa-CGGCuaGcCGCAGUAG-AGC-ACC- -5'
19481 5' -53.8 NC_004685.1 + 2915 0.66 0.877146
Target:  5'- cCCAgUGCCGGUgCGGCGggcCAguUCUUGgucUGGa -3'
miRNA:   3'- -GGU-ACGGCUA-GCCGCa--GU--AGAGC---ACC- -5'
19481 5' -53.8 NC_004685.1 + 30166 0.66 0.877146
Target:  5'- uCCAUGCCGcugauGUCcgguggGGCGUCGUC-CGg-- -3'
miRNA:   3'- -GGUACGGC-----UAG------CCGCAGUAGaGCacc -5'
19481 5' -53.8 NC_004685.1 + 25741 0.66 0.877146
Target:  5'- uCgAUGCCGAugguguacuggUUGGCGUUGUUg-GUGGg -3'
miRNA:   3'- -GgUACGGCU-----------AGCCGCAGUAGagCACC- -5'
19481 5' -53.8 NC_004685.1 + 53743 0.66 0.861647
Target:  5'- ---gGCCGAUggCGGCGUCcacuUCUCGg-- -3'
miRNA:   3'- gguaCGGCUA--GCCGCAGu---AGAGCacc -5'
19481 5' -53.8 NC_004685.1 + 19148 0.67 0.853553
Target:  5'- aCAacCUGGUCGGCGUCGggCU-GUGGg -3'
miRNA:   3'- gGUacGGCUAGCCGCAGUa-GAgCACC- -5'
19481 5' -53.8 NC_004685.1 + 16494 0.67 0.853553
Target:  5'- gCCAagaGCUGGUCGGCGUCGUgcaguacaCcCGcUGGg -3'
miRNA:   3'- -GGUa--CGGCUAGCCGCAGUA--------GaGC-ACC- -5'
19481 5' -53.8 NC_004685.1 + 7464 0.67 0.836711
Target:  5'- aUCGUGCCGA-CGGUGcagcacggcUCGUCcaUGUGGg -3'
miRNA:   3'- -GGUACGGCUaGCCGC---------AGUAGa-GCACC- -5'
19481 5' -53.8 NC_004685.1 + 15813 0.67 0.831496
Target:  5'- uCCAUGCCGAUCuaccggaugcgcaacGGCcgcaUCAUCgacucaGUGGc -3'
miRNA:   3'- -GGUACGGCUAG---------------CCGc---AGUAGag----CACC- -5'
19481 5' -53.8 NC_004685.1 + 58632 0.67 0.827979
Target:  5'- uCCAUGCUcuguGGUCGGCauagucGUCAUCUCc--- -3'
miRNA:   3'- -GGUACGG----CUAGCCG------CAGUAGAGcacc -5'
19481 5' -53.8 NC_004685.1 + 3798 0.67 0.819052
Target:  5'- aCCcUGCCGugcUGGCucgCAUCUCGUcGGg -3'
miRNA:   3'- -GGuACGGCua-GCCGca-GUAGAGCA-CC- -5'
19481 5' -53.8 NC_004685.1 + 29272 0.68 0.791188
Target:  5'- --uUGCCGGUCGGCcacUCGgUCUCGUccaGGc -3'
miRNA:   3'- gguACGGCUAGCCGc--AGU-AGAGCA---CC- -5'
19481 5' -53.8 NC_004685.1 + 47110 0.68 0.791188
Target:  5'- aCCGUGCUGggCGGUGugguuggcgccaUCGUUUCGUa- -3'
miRNA:   3'- -GGUACGGCuaGCCGC------------AGUAGAGCAcc -5'
19481 5' -53.8 NC_004685.1 + 9394 0.68 0.791188
Target:  5'- ---aGCCGGaUGGCGUCG-C-CGUGGg -3'
miRNA:   3'- gguaCGGCUaGCCGCAGUaGaGCACC- -5'
19481 5' -53.8 NC_004685.1 + 27074 0.68 0.771807
Target:  5'- cCCAUGCUGG-CGGUGUUGU--UGUGGu -3'
miRNA:   3'- -GGUACGGCUaGCCGCAGUAgaGCACC- -5'
19481 5' -53.8 NC_004685.1 + 62947 0.68 0.761906
Target:  5'- gCCcgGCCGAUcCGGCGggGUgaCGUGa -3'
miRNA:   3'- -GGuaCGGCUA-GCCGCagUAgaGCACc -5'
19481 5' -53.8 NC_004685.1 + 22771 0.69 0.731488
Target:  5'- gCCAUGCCauUCGGagcguccacCGUCAcgUUCGUGGu -3'
miRNA:   3'- -GGUACGGcuAGCC---------GCAGUa-GAGCACC- -5'
19481 5' -53.8 NC_004685.1 + 16677 0.69 0.731488
Target:  5'- gCCugcUGCCGGUCauGGCGUCGg-UgGUGGa -3'
miRNA:   3'- -GGu--ACGGCUAG--CCGCAGUagAgCACC- -5'
19481 5' -53.8 NC_004685.1 + 60883 0.7 0.700218
Target:  5'- cCCA-GCaGGUCGGCGgcgcgUAUCUCGaUGGc -3'
miRNA:   3'- -GGUaCGgCUAGCCGCa----GUAGAGC-ACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.