miRNA display CGI

Results 1 - 10 of 10 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
19488	3'	-51.3	NC_004685.1	+	4659	0.66	0.932804
	Target:  5'- cGUCGAGGAUggcgUGCCgUGGGUGGucGCa -3' miRNA:   3'- cUAGUUCCUA----AUGG-ACCCACUccUGc -5'
19488	3'	-51.3	NC_004685.1	+	39450	0.66	0.932252
	Target:  5'- --gCAAGGGccgcGCCUGGGUccaguuccggcaaGAGGugGu -3' miRNA:   3'- cuaGUUCCUaa--UGGACCCA-------------CUCCugC- -5'
19488	3'	-51.3	NC_004685.1	+	40723	0.67	0.908529
	Target:  5'- cGUCGGGGucaccgUACCgagcgGGGUGAGcGCGc -3' miRNA:   3'- cUAGUUCCua----AUGGa----CCCACUCcUGC- -5'
19488	3'	-51.3	NC_004685.1	+	12917	0.67	0.903817
	Target:  5'- aGUCGAGGAgcagguggucaacuuCCaGGGUGAGGuCGu -3' miRNA:   3'- cUAGUUCCUaau------------GGaCCCACUCCuGC- -5'
19488	3'	-51.3	NC_004685.1	+	5364	0.68	0.879794
	Target:  5'- --cCGAGGGUUGCCUcggcccGGGUGuuGGCu -3' miRNA:   3'- cuaGUUCCUAAUGGA------CCCACucCUGc -5'
19488	3'	-51.3	NC_004685.1	+	18398	0.69	0.810286
	Target:  5'- cGAUCAAGGug-ACCUcgcacagcgaGGGUgucGAGGugGa -3' miRNA:   3'- -CUAGUUCCuaaUGGA----------CCCA---CUCCugC- -5'
19488	3'	-51.3	NC_004685.1	+	45045	0.7	0.774705
	Target:  5'- uGGUCAAGGcgGUcACCUGGGgcaacccgaaccgcGAGGugGg -3' miRNA:   3'- -CUAGUUCC--UAaUGGACCCa-------------CUCCugC- -5'
19488	3'	-51.3	NC_004685.1	+	23606	0.72	0.629436
	Target:  5'- cGGUCGAuGGAUcugGCaccaCUGGGUGGGGACc -3' miRNA:   3'- -CUAGUU-CCUAa--UG----GACCCACUCCUGc -5'
19488	3'	-51.3	NC_004685.1	+	3098	0.76	0.423784
	Target:  5'- cGAUCAccGGGAUUuucagggugacguCCUGGGUGAGGcCGu -3' miRNA:   3'- -CUAGU--UCCUAAu------------GGACCCACUCCuGC- -5'
19488	3'	-51.3	NC_004685.1	+	40161	1.08	0.003742
	Target:  5'- gGAUCAAGGAUUACCUGGGUGAGGACGc -3' miRNA:   3'- -CUAGUUCCUAAUGGACCCACUCCUGC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home