miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19488 5' -53.6 NC_004685.1 + 63004 0.66 0.868029
Target:  5'- cUCGgGC-UCCUUGGCCCCgGCCUUGc -3'
miRNA:   3'- cAGCaUGaAGGAGUUGGGG-UGGAGCu -5'
19488 5' -53.6 NC_004685.1 + 41162 0.66 0.868029
Target:  5'- cGUCGUGCUUCUcgCGGCCCgCgACCacaUCGc -3'
miRNA:   3'- -CAGCAUGAAGGa-GUUGGG-G-UGG---AGCu -5'
19488 5' -53.6 NC_004685.1 + 57066 0.66 0.843151
Target:  5'- gGUCG-AUUUCCUgccCGGCCUugcgCACCUCGGc -3'
miRNA:   3'- -CAGCaUGAAGGA---GUUGGG----GUGGAGCU- -5'
19488 5' -53.6 NC_004685.1 + 62194 0.66 0.843151
Target:  5'- uGUCGaaggugacCUUCUUCGACUUCACCUCu- -3'
miRNA:   3'- -CAGCau------GAAGGAGUUGGGGUGGAGcu -5'
19488 5' -53.6 NC_004685.1 + 67470 0.67 0.82546
Target:  5'- cGUCGU-CUUCC--AGCUCCAgCUCGGc -3'
miRNA:   3'- -CAGCAuGAAGGagUUGGGGUgGAGCU- -5'
19488 5' -53.6 NC_004685.1 + 53132 0.67 0.82546
Target:  5'- cGUCGU-Cg--CUCGGCUCCACgUCGAg -3'
miRNA:   3'- -CAGCAuGaagGAGUUGGGGUGgAGCU- -5'
19488 5' -53.6 NC_004685.1 + 54983 0.67 0.806967
Target:  5'- uGUCGgcgugcaGCUugcccUCCUCGGgCaCCGCCUCGGg -3'
miRNA:   3'- -CAGCa------UGA-----AGGAGUUgG-GGUGGAGCU- -5'
19488 5' -53.6 NC_004685.1 + 41621 0.7 0.651245
Target:  5'- cGUCG-GCgaCCUCAGCCUCAgCCUUGGc -3'
miRNA:   3'- -CAGCaUGaaGGAGUUGGGGU-GGAGCU- -5'
19488 5' -53.6 NC_004685.1 + 47770 0.7 0.617374
Target:  5'- cUCGgcCUugUCCUCAGCCUCuggcucaGCCUCGGg -3'
miRNA:   3'- cAGCauGA--AGGAGUUGGGG-------UGGAGCU- -5'
19488 5' -53.6 NC_004685.1 + 38231 0.71 0.585792
Target:  5'- cGUCG-GCgUCCUCGGCCCCggcACCaUCGGc -3'
miRNA:   3'- -CAGCaUGaAGGAGUUGGGG---UGG-AGCU- -5'
19488 5' -53.6 NC_004685.1 + 27866 0.73 0.490632
Target:  5'- gGUCGc----CCUCGGCCCCACgUCGAa -3'
miRNA:   3'- -CAGCaugaaGGAGUUGGGGUGgAGCU- -5'
19488 5' -53.6 NC_004685.1 + 40200 1.09 0.002115
Target:  5'- aGUCGUACUUCCUCAACCCCACCUCGAc -3'
miRNA:   3'- -CAGCAUGAAGGAGUUGGGGUGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.