miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1949 3' -56.5 NC_001347.2 + 160678 0.66 0.947015
Target:  5'- cACGUCAcCAcccuCGCCGcUGCcuacgcgaUCGGCGGCc -3'
miRNA:   3'- -UGUAGUaGUc---GCGGC-ACG--------AGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 160962 0.66 0.947015
Target:  5'- uACAg---CGGCGCCGccaUGC-CAGgGGCc -3'
miRNA:   3'- -UGUaguaGUCGCGGC---ACGaGUCgCCG- -5'
1949 3' -56.5 NC_001347.2 + 143801 0.66 0.946591
Target:  5'- cCAUCAucccgaaUCAGgGCCGcucGCUgaacaAGCGGCu -3'
miRNA:   3'- uGUAGU-------AGUCgCGGCa--CGAg----UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 170072 0.66 0.945736
Target:  5'- gGCGUCGUCAGUuggcgucccgagucGCCGU-CUCccgaCGGCa -3'
miRNA:   3'- -UGUAGUAGUCG--------------CGGCAcGAGuc--GCCG- -5'
1949 3' -56.5 NC_001347.2 + 71705 0.66 0.945736
Target:  5'- gACAUCAUCGcCGCCGacccgcgugugcccUGCcUCA-CGGCu -3'
miRNA:   3'- -UGUAGUAGUcGCGGC--------------ACG-AGUcGCCG- -5'
1949 3' -56.5 NC_001347.2 + 164731 0.66 0.942672
Target:  5'- uGCAaCGUCcaGGCGCUgGUGUUggcaggcaaCGGCGGCa -3'
miRNA:   3'- -UGUaGUAG--UCGCGG-CACGA---------GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 152801 0.66 0.942672
Target:  5'- gACGUgCAUguGCaaccgGCCGUcCUCGGCGuGCa -3'
miRNA:   3'- -UGUA-GUAguCG-----CGGCAcGAGUCGC-CG- -5'
1949 3' -56.5 NC_001347.2 + 212912 0.66 0.942672
Target:  5'- gGCAgUAUC-GUGuuGUGCUucaacguuacCGGCGGCa -3'
miRNA:   3'- -UGUaGUAGuCGCggCACGA----------GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 107090 0.66 0.939958
Target:  5'- cGCGUaCGaCAcGCGCUGUGCUggcaucgaguggaaGGCGGCa -3'
miRNA:   3'- -UGUA-GUaGU-CGCGGCACGAg-------------UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 17015 0.66 0.938103
Target:  5'- cCAUUuggcaGGCGCgCGUGgUCcGCGGCg -3'
miRNA:   3'- uGUAGuag--UCGCG-GCACgAGuCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 114312 0.66 0.938103
Target:  5'- -uGUC-UCGGaccaCGCCGUGCUUAGUcGCa -3'
miRNA:   3'- ugUAGuAGUC----GCGGCACGAGUCGcCG- -5'
1949 3' -56.5 NC_001347.2 + 193085 0.66 0.937634
Target:  5'- gGCAUgucCGGcCGUCGcaagggcUGCUCGGCGGCc -3'
miRNA:   3'- -UGUAguaGUC-GCGGC-------ACGAGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 159445 0.66 0.936689
Target:  5'- uCGUCGUCuGCgGCCGcggccGCUCGaugacgaugucggcGCGGCg -3'
miRNA:   3'- uGUAGUAGuCG-CGGCa----CGAGU--------------CGCCG- -5'
1949 3' -56.5 NC_001347.2 + 82810 0.66 0.933308
Target:  5'- gACGUgcUCAaaccGCGUCGUGagcgCGGCGGCu -3'
miRNA:   3'- -UGUAguAGU----CGCGGCACga--GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 37679 0.66 0.933308
Target:  5'- gGCAUCGUugCAGCGuCCG-GUUUGGUuuGGCg -3'
miRNA:   3'- -UGUAGUA--GUCGC-GGCaCGAGUCG--CCG- -5'
1949 3' -56.5 NC_001347.2 + 87627 0.66 0.933308
Target:  5'- aGCGaCggCGGCuGCUGuUGCUCgccAGCGGCg -3'
miRNA:   3'- -UGUaGuaGUCG-CGGC-ACGAG---UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 114441 0.66 0.933308
Target:  5'- cCGUCucagcCAGCGCCuGUGUcacccgcgcuUgAGCGGCg -3'
miRNA:   3'- uGUAGua---GUCGCGG-CACG----------AgUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 101827 0.66 0.931825
Target:  5'- cACAUCAccaaagaaacggucUCGGCGCCG-GC-CAccuaCGGCa -3'
miRNA:   3'- -UGUAGU--------------AGUCGCGGCaCGaGUc---GCCG- -5'
1949 3' -56.5 NC_001347.2 + 158311 0.66 0.929308
Target:  5'- aGCGUCAUCuucaacacgcaCGCCGaGCUCGugcacugcucgcucuGCGGCa -3'
miRNA:   3'- -UGUAGUAGuc---------GCGGCaCGAGU---------------CGCCG- -5'
1949 3' -56.5 NC_001347.2 + 79060 0.66 0.928285
Target:  5'- gGCG-CGUCGGCGCCaaaugaGCcgcgaAGCGGCg -3'
miRNA:   3'- -UGUaGUAGUCGCGGca----CGag---UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.