Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 212912 | 0.66 | 0.942672 |
Target: 5'- gGCAgUAUC-GUGuuGUGCUucaacguuacCGGCGGCa -3' miRNA: 3'- -UGUaGUAGuCGCggCACGA----------GUCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 152801 | 0.66 | 0.942672 |
Target: 5'- gACGUgCAUguGCaaccgGCCGUcCUCGGCGuGCa -3' miRNA: 3'- -UGUA-GUAguCG-----CGGCAcGAGUCGC-CG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 164731 | 0.66 | 0.942672 |
Target: 5'- uGCAaCGUCcaGGCGCUgGUGUUggcaggcaaCGGCGGCa -3' miRNA: 3'- -UGUaGUAG--UCGCGG-CACGA---------GUCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 107090 | 0.66 | 0.939958 |
Target: 5'- cGCGUaCGaCAcGCGCUGUGCUggcaucgaguggaaGGCGGCa -3' miRNA: 3'- -UGUA-GUaGU-CGCGGCACGAg-------------UCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 17015 | 0.66 | 0.938103 |
Target: 5'- cCAUUuggcaGGCGCgCGUGgUCcGCGGCg -3' miRNA: 3'- uGUAGuag--UCGCG-GCACgAGuCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 193085 | 0.66 | 0.937634 |
Target: 5'- gGCAUgucCGGcCGUCGcaagggcUGCUCGGCGGCc -3' miRNA: 3'- -UGUAguaGUC-GCGGC-------ACGAGUCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 114312 | 0.66 | 0.938103 |
Target: 5'- -uGUC-UCGGaccaCGCCGUGCUUAGUcGCa -3' miRNA: 3'- ugUAGuAGUC----GCGGCACGAGUCGcCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 159445 | 0.66 | 0.936689 |
Target: 5'- uCGUCGUCuGCgGCCGcggccGCUCGaugacgaugucggcGCGGCg -3' miRNA: 3'- uGUAGUAGuCG-CGGCa----CGAGU--------------CGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 207118 | 0.67 | 0.893381 |
Target: 5'- gACAguuccUCGUCGGCGCUuacggagggGUGUUUGGCGaGCc -3' miRNA: 3'- -UGU-----AGUAGUCGCGG---------CACGAGUCGC-CG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 163615 | 0.67 | 0.893381 |
Target: 5'- cCAgUGUCAGCGCCGaGC-C-GCGGCu -3' miRNA: 3'- uGUaGUAGUCGCGGCaCGaGuCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 175050 | 0.67 | 0.893381 |
Target: 5'- aACGagAgCGGCGCCGUcUUCGGCGuGCa -3' miRNA: 3'- -UGUagUaGUCGCGGCAcGAGUCGC-CG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 140035 | 0.67 | 0.899759 |
Target: 5'- -aGUCGUCGGCGCgGcaucccagcGC-CGGCGGUa -3' miRNA: 3'- ugUAGUAGUCGCGgCa--------CGaGUCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 118875 | 0.67 | 0.899759 |
Target: 5'- cCGUCGaaUCAGCGUCGUccccacGCcCGGaCGGCa -3' miRNA: 3'- uGUAGU--AGUCGCGGCA------CGaGUC-GCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 183561 | 0.67 | 0.905916 |
Target: 5'- cACAUCGUCGGCGCCuagGUGCacgcugauguccUCGGgcuugacgcCGGUu -3' miRNA: 3'- -UGUAGUAGUCGCGG---CACG------------AGUC---------GCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 38698 | 0.67 | 0.905916 |
Target: 5'- cGCAgcuccCGUCcgAGCGCCGUcGCcuccUCGGCGcGCa -3' miRNA: 3'- -UGUa----GUAG--UCGCGGCA-CG----AGUCGC-CG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 85329 | 0.67 | 0.917555 |
Target: 5'- -gGUgAUCAGCGCCGccGC-CAGCGcCg -3' miRNA: 3'- ugUAgUAGUCGCGGCa-CGaGUCGCcG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 25409 | 0.67 | 0.917555 |
Target: 5'- cGCGUUGUUgAGCGCCuucUGCUacGCGGCg -3' miRNA: 3'- -UGUAGUAG-UCGCGGc--ACGAguCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 8357 | 0.67 | 0.893381 |
Target: 5'- uGCGUU-UCGGCGCCGUGCaguuGCcGCg -3' miRNA: 3'- -UGUAGuAGUCGCGGCACGagu-CGcCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 171459 | 0.68 | 0.879973 |
Target: 5'- cGCGcUCA--AGgGCCGUGcCUCGGUGGUc -3' miRNA: 3'- -UGU-AGUagUCgCGGCAC-GAGUCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 174433 | 0.68 | 0.879973 |
Target: 5'- cGCGUCAgcggcaCGGUGCUGcGuCUCAGCuGGCc -3' miRNA: 3'- -UGUAGUa-----GUCGCGGCaC-GAGUCG-CCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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