miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1949 3' -56.5 NC_001347.2 + 161948 0.68 0.850672
Target:  5'- ---cCAUCAGCGCCuugGCgUCGGgGGUg -3'
miRNA:   3'- uguaGUAGUCGCGGca-CG-AGUCgCCG- -5'
1949 3' -56.5 NC_001347.2 + 126153 0.68 0.858295
Target:  5'- gGCAUCuuuuccgCAcGC-CCGUGCUCucgcccgaacacGGCGGCg -3'
miRNA:   3'- -UGUAGua-----GU-CGcGGCACGAG------------UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 93654 0.68 0.858295
Target:  5'- gACcUCGUC-GCgGUCGUGCggaUCGGUGGCg -3'
miRNA:   3'- -UGuAGUAGuCG-CGGCACG---AGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 169120 0.68 0.865724
Target:  5'- gGCcUCGgccgCGcGCGCCGcGCUgCAGUGGCu -3'
miRNA:   3'- -UGuAGUa---GU-CGCGGCaCGA-GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 174433 0.68 0.879973
Target:  5'- cGCGUCAgcggcaCGGUGCUGcGuCUCAGCuGGCc -3'
miRNA:   3'- -UGUAGUa-----GUCGCGGCaC-GAGUCG-CCG- -5'
1949 3' -56.5 NC_001347.2 + 171459 0.68 0.879973
Target:  5'- cGCGcUCA--AGgGCCGUGcCUCGGUGGUc -3'
miRNA:   3'- -UGU-AGUagUCgCGGCAC-GAGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 113624 0.68 0.872952
Target:  5'- cACGUCGUCgcAGCGCCG-GCUggagagcgagaGGcCGGCg -3'
miRNA:   3'- -UGUAGUAG--UCGCGGCaCGAg----------UC-GCCG- -5'
1949 3' -56.5 NC_001347.2 + 86256 0.69 0.809849
Target:  5'- gGCgAUC-UCGGCGCgCGaaGCuUCGGCGGCg -3'
miRNA:   3'- -UG-UAGuAGUCGCG-GCa-CG-AGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 38002 0.69 0.818351
Target:  5'- gGCAg---CAGcCGCCGcgcgGcCUCGGCGGCg -3'
miRNA:   3'- -UGUaguaGUC-GCGGCa---C-GAGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 1876 0.69 0.818351
Target:  5'- uGCGUCGgcaccugaacCAGCGuCUGUGCUgCGGCuGGCu -3'
miRNA:   3'- -UGUAGUa---------GUCGC-GGCACGA-GUCG-CCG- -5'
1949 3' -56.5 NC_001347.2 + 75404 0.69 0.818351
Target:  5'- aGCGggagCGGCgGCCGUgGCggcggCAGCGGCg -3'
miRNA:   3'- -UGUaguaGUCG-CGGCA-CGa----GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 38231 0.69 0.834863
Target:  5'- cCAUCAccgUCGGCGCCGcUGCUgCuGCcGCg -3'
miRNA:   3'- uGUAGU---AGUCGCGGC-ACGA-GuCGcCG- -5'
1949 3' -56.5 NC_001347.2 + 135205 0.69 0.842859
Target:  5'- -gGUCcgaGGCGCCGaccccgGCUgGGCGGCc -3'
miRNA:   3'- ugUAGuagUCGCGGCa-----CGAgUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 153854 0.69 0.842859
Target:  5'- cACGUCcUCGuGUGCCGcGCcgAGCGGCg -3'
miRNA:   3'- -UGUAGuAGU-CGCGGCaCGagUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 100512 0.69 0.842859
Target:  5'- aACAaCGUCGGUGCaCGUagagCAGCGGCc -3'
miRNA:   3'- -UGUaGUAGUCGCG-GCAcga-GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 142432 0.69 0.842859
Target:  5'- gGCGUCGgcgCGGCGuCCG-GCgUCGGgGGUg -3'
miRNA:   3'- -UGUAGUa--GUCGC-GGCaCG-AGUCgCCG- -5'
1949 3' -56.5 NC_001347.2 + 150628 0.7 0.792391
Target:  5'- -aAUCA-CGGCGCCG-GCgguacugCGGCGGUu -3'
miRNA:   3'- ugUAGUaGUCGCGGCaCGa------GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 13995 0.7 0.763339
Target:  5'- aACGUCucuccgguaacuAUCGGCgGCCGgggcugugaaccGCUCAGUGGCu -3'
miRNA:   3'- -UGUAG------------UAGUCG-CGGCa-----------CGAGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 196129 0.71 0.717714
Target:  5'- cGCGaacUCAUCGGcCGCUGccUGC-CGGCGGCc -3'
miRNA:   3'- -UGU---AGUAGUC-GCGGC--ACGaGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 76787 0.71 0.707975
Target:  5'- aGCGUCucguggcuaaCGGCGCUGUcaGC-CAGCGGCa -3'
miRNA:   3'- -UGUAGua--------GUCGCGGCA--CGaGUCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.