Results 61 - 70 of 70 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
|
P value |
| Predicted miRNA align pattern | |||||||
| 1949 | 3' | -56.5 | NC_001347.2 | + | 139321 | 0.72 | 0.638547 |
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Target: 5'- -gAUCuggCGGCGuuGUGCgCGGCGGUg -3' miRNA: 3'- ugUAGua-GUCGCggCACGaGUCGCCG- -5' |
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| 1949 | 3' | -56.5 | NC_001347.2 | + | 158085 | 0.73 | 0.588644 |
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Target: 5'- uGCA-C-UCAGCGCCGcGCUgcgCGGCGGCc -3' miRNA: 3'- -UGUaGuAGUCGCGGCaCGA---GUCGCCG- -5' |
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| 1949 | 3' | -56.5 | NC_001347.2 | + | 181043 | 0.73 | 0.578728 |
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Target: 5'- aACAUCcuUCAGCGUCGUccGCgcgGGCGGCa -3' miRNA: 3'- -UGUAGu-AGUCGCGGCA--CGag-UCGCCG- -5' |
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| 1949 | 3' | -56.5 | NC_001347.2 | + | 1192 | 0.73 | 0.608562 |
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Target: 5'- ---cCAUgGGCGCCGUGUggCGcGCGGCg -3' miRNA: 3'- uguaGUAgUCGCGGCACGa-GU-CGCCG- -5' |
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| 1949 | 3' | -56.5 | NC_001347.2 | + | 163959 | 0.73 | 0.598592 |
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Target: 5'- cGCG-CGUCAGCaGCugCGUGCUCAGaCGGUc -3' miRNA: 3'- -UGUaGUAGUCG-CG--GCACGAGUC-GCCG- -5' |
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| 1949 | 3' | -56.5 | NC_001347.2 | + | 208709 | 0.73 | 0.628547 |
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Target: 5'- cACGUCGgccacCAGCGCCGUGguCUCGGUcgccaGGCu -3' miRNA: 3'- -UGUAGUa----GUCGCGGCAC--GAGUCG-----CCG- -5' |
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| 1949 | 3' | -56.5 | NC_001347.2 | + | 95475 | 0.74 | 0.529807 |
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Target: 5'- cGCGUCAcgCGGCGCCgGUG-UCGGCGGa -3' miRNA: 3'- -UGUAGUa-GUCGCGG-CACgAGUCGCCg -5' |
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| 1949 | 3' | -56.5 | NC_001347.2 | + | 97897 | 0.75 | 0.520195 |
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Target: 5'- cACGUCGUCuucGGCGUCGgGCggCGGCGGUa -3' miRNA: 3'- -UGUAGUAG---UCGCGGCaCGa-GUCGCCG- -5' |
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| 1949 | 3' | -56.5 | NC_001347.2 | + | 150574 | 0.75 | 0.473258 |
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Target: 5'- gGCGUUuUCAGCGUCG-GCUCcggcaguaguGGCGGCg -3' miRNA: 3'- -UGUAGuAGUCGCGGCaCGAG----------UCGCCG- -5' |
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| 1949 | 3' | -56.5 | NC_001347.2 | + | 162022 | 0.79 | 0.303867 |
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Target: 5'- cACAgguUCuGCGCCGUGCUCAGCuGCu -3' miRNA: 3'- -UGUaguAGuCGCGGCACGAGUCGcCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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