miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1949 3' -56.5 NC_001347.2 + 162022 0.79 0.303867
Target:  5'- cACAgguUCuGCGCCGUGCUCAGCuGCu -3'
miRNA:   3'- -UGUaguAGuCGCGGCACGAGUCGcCG- -5'
1949 3' -56.5 NC_001347.2 + 150574 0.75 0.473258
Target:  5'- gGCGUUuUCAGCGUCG-GCUCcggcaguaguGGCGGCg -3'
miRNA:   3'- -UGUAGuAGUCGCGGCaCGAG----------UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 97897 0.75 0.520195
Target:  5'- cACGUCGUCuucGGCGUCGgGCggCGGCGGUa -3'
miRNA:   3'- -UGUAGUAG---UCGCGGCaCGa-GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 95475 0.74 0.529807
Target:  5'- cGCGUCAcgCGGCGCCgGUG-UCGGCGGa -3'
miRNA:   3'- -UGUAGUa-GUCGCGG-CACgAGUCGCCg -5'
1949 3' -56.5 NC_001347.2 + 181043 0.73 0.578728
Target:  5'- aACAUCcuUCAGCGUCGUccGCgcgGGCGGCa -3'
miRNA:   3'- -UGUAGu-AGUCGCGGCA--CGag-UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 208709 0.73 0.628547
Target:  5'- cACGUCGgccacCAGCGCCGUGguCUCGGUcgccaGGCu -3'
miRNA:   3'- -UGUAGUa----GUCGCGGCAC--GAGUCG-----CCG- -5'
1949 3' -56.5 NC_001347.2 + 163959 0.73 0.598592
Target:  5'- cGCG-CGUCAGCaGCugCGUGCUCAGaCGGUc -3'
miRNA:   3'- -UGUaGUAGUCG-CG--GCACGAGUC-GCCG- -5'
1949 3' -56.5 NC_001347.2 + 1192 0.73 0.608562
Target:  5'- ---cCAUgGGCGCCGUGUggCGcGCGGCg -3'
miRNA:   3'- uguaGUAgUCGCGGCACGa-GU-CGCCG- -5'
1949 3' -56.5 NC_001347.2 + 158085 0.73 0.588644
Target:  5'- uGCA-C-UCAGCGCCGcGCUgcgCGGCGGCc -3'
miRNA:   3'- -UGUaGuAGUCGCGGCaCGA---GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 139321 0.72 0.638547
Target:  5'- -gAUCuggCGGCGuuGUGCgCGGCGGUg -3'
miRNA:   3'- ugUAGua-GUCGCggCACGaGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 76787 0.71 0.707975
Target:  5'- aGCGUCucguggcuaaCGGCGCUGUcaGC-CAGCGGCa -3'
miRNA:   3'- -UGUAGua--------GUCGCGGCA--CGaGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 196129 0.71 0.717714
Target:  5'- cGCGaacUCAUCGGcCGCUGccUGC-CGGCGGCc -3'
miRNA:   3'- -UGU---AGUAGUC-GCGGC--ACGaGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 13995 0.7 0.763339
Target:  5'- aACGUCucuccgguaacuAUCGGCgGCCGgggcugugaaccGCUCAGUGGCu -3'
miRNA:   3'- -UGUAG------------UAGUCG-CGGCa-----------CGAGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 150628 0.7 0.792391
Target:  5'- -aAUCA-CGGCGCCG-GCgguacugCGGCGGUu -3'
miRNA:   3'- ugUAGUaGUCGCGGCaCGa------GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 86256 0.69 0.809849
Target:  5'- gGCgAUC-UCGGCGCgCGaaGCuUCGGCGGCg -3'
miRNA:   3'- -UG-UAGuAGUCGCG-GCa-CG-AGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 153854 0.69 0.842859
Target:  5'- cACGUCcUCGuGUGCCGcGCcgAGCGGCg -3'
miRNA:   3'- -UGUAGuAGU-CGCGGCaCGagUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 38231 0.69 0.834863
Target:  5'- cCAUCAccgUCGGCGCCGcUGCUgCuGCcGCg -3'
miRNA:   3'- uGUAGU---AGUCGCGGC-ACGA-GuCGcCG- -5'
1949 3' -56.5 NC_001347.2 + 38002 0.69 0.818351
Target:  5'- gGCAg---CAGcCGCCGcgcgGcCUCGGCGGCg -3'
miRNA:   3'- -UGUaguaGUC-GCGGCa---C-GAGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 142432 0.69 0.842859
Target:  5'- gGCGUCGgcgCGGCGuCCG-GCgUCGGgGGUg -3'
miRNA:   3'- -UGUAGUa--GUCGC-GGCaCG-AGUCgCCG- -5'
1949 3' -56.5 NC_001347.2 + 1876 0.69 0.818351
Target:  5'- uGCGUCGgcaccugaacCAGCGuCUGUGCUgCGGCuGGCu -3'
miRNA:   3'- -UGUAGUa---------GUCGC-GGCACGA-GUCG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.