Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 38002 | 0.69 | 0.818351 |
Target: 5'- gGCAg---CAGcCGCCGcgcgGcCUCGGCGGCg -3' miRNA: 3'- -UGUaguaGUC-GCGGCa---C-GAGUCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 38231 | 0.69 | 0.834863 |
Target: 5'- cCAUCAccgUCGGCGCCGcUGCUgCuGCcGCg -3' miRNA: 3'- uGUAGU---AGUCGCGGC-ACGA-GuCGcCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 142432 | 0.69 | 0.842859 |
Target: 5'- gGCGUCGgcgCGGCGuCCG-GCgUCGGgGGUg -3' miRNA: 3'- -UGUAGUa--GUCGC-GGCaCG-AGUCgCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 155898 | 0.68 | 0.849899 |
Target: 5'- ----aGUCGGCGCCGgGUaaauaaaUCGGCGGUg -3' miRNA: 3'- uguagUAGUCGCGGCaCG-------AGUCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 93654 | 0.68 | 0.858295 |
Target: 5'- gACcUCGUC-GCgGUCGUGCggaUCGGUGGCg -3' miRNA: 3'- -UGuAGUAGuCG-CGGCACG---AGUCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 113624 | 0.68 | 0.872952 |
Target: 5'- cACGUCGUCgcAGCGCCG-GCUggagagcgagaGGcCGGCg -3' miRNA: 3'- -UGUAGUAG--UCGCGGCaCGAg----------UC-GCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 171459 | 0.68 | 0.879973 |
Target: 5'- cGCGcUCA--AGgGCCGUGcCUCGGUGGUc -3' miRNA: 3'- -UGU-AGUagUCgCGGCAC-GAGUCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 126153 | 0.68 | 0.858295 |
Target: 5'- gGCAUCuuuuccgCAcGC-CCGUGCUCucgcccgaacacGGCGGCg -3' miRNA: 3'- -UGUAGua-----GU-CGcGGCACGAG------------UCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 174433 | 0.68 | 0.879973 |
Target: 5'- cGCGUCAgcggcaCGGUGCUGcGuCUCAGCuGGCc -3' miRNA: 3'- -UGUAGUa-----GUCGCGGCaC-GAGUCG-CCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 5011 | 0.68 | 0.850672 |
Target: 5'- uGCaAUUAUCAGCGUcaccacugaCGUGCUaggaccGCGGCa -3' miRNA: 3'- -UG-UAGUAGUCGCG---------GCACGAgu----CGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 169120 | 0.68 | 0.865724 |
Target: 5'- gGCcUCGgccgCGcGCGCCGcGCUgCAGUGGCu -3' miRNA: 3'- -UGuAGUa---GU-CGCGGCaCGA-GUCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 161948 | 0.68 | 0.850672 |
Target: 5'- ---cCAUCAGCGCCuugGCgUCGGgGGUg -3' miRNA: 3'- uguaGUAGUCGCGGca-CG-AGUCgCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 175050 | 0.67 | 0.893381 |
Target: 5'- aACGagAgCGGCGCCGUcUUCGGCGuGCa -3' miRNA: 3'- -UGUagUaGUCGCGGCAcGAGUCGC-CG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 163615 | 0.67 | 0.893381 |
Target: 5'- cCAgUGUCAGCGCCGaGC-C-GCGGCu -3' miRNA: 3'- uGUaGUAGUCGCGGCaCGaGuCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 207118 | 0.67 | 0.893381 |
Target: 5'- gACAguuccUCGUCGGCGCUuacggagggGUGUUUGGCGaGCc -3' miRNA: 3'- -UGU-----AGUAGUCGCGG---------CACGAGUCGC-CG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 140035 | 0.67 | 0.899759 |
Target: 5'- -aGUCGUCGGCGCgGcaucccagcGC-CGGCGGUa -3' miRNA: 3'- ugUAGUAGUCGCGgCa--------CGaGUCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 118875 | 0.67 | 0.899759 |
Target: 5'- cCGUCGaaUCAGCGUCGUccccacGCcCGGaCGGCa -3' miRNA: 3'- uGUAGU--AGUCGCGGCA------CGaGUC-GCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 38698 | 0.67 | 0.905916 |
Target: 5'- cGCAgcuccCGUCcgAGCGCCGUcGCcuccUCGGCGcGCa -3' miRNA: 3'- -UGUa----GUAG--UCGCGGCA-CG----AGUCGC-CG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 85329 | 0.67 | 0.917555 |
Target: 5'- -gGUgAUCAGCGCCGccGC-CAGCGcCg -3' miRNA: 3'- ugUAgUAGUCGCGGCa-CGaGUCGCcG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 25409 | 0.67 | 0.917555 |
Target: 5'- cGCGUUGUUgAGCGCCuucUGCUacGCGGCg -3' miRNA: 3'- -UGUAGUAG-UCGCGGc--ACGAguCGCCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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