miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1949 3' -56.5 NC_001347.2 + 153854 0.69 0.842859
Target:  5'- cACGUCcUCGuGUGCCGcGCcgAGCGGCg -3'
miRNA:   3'- -UGUAGuAGU-CGCGGCaCGagUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 142432 0.69 0.842859
Target:  5'- gGCGUCGgcgCGGCGuCCG-GCgUCGGgGGUg -3'
miRNA:   3'- -UGUAGUa--GUCGC-GGCaCG-AGUCgCCG- -5'
1949 3' -56.5 NC_001347.2 + 100512 0.69 0.842859
Target:  5'- aACAaCGUCGGUGCaCGUagagCAGCGGCc -3'
miRNA:   3'- -UGUaGUAGUCGCG-GCAcga-GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 155898 0.68 0.849899
Target:  5'- ----aGUCGGCGCCGgGUaaauaaaUCGGCGGUg -3'
miRNA:   3'- uguagUAGUCGCGGCaCG-------AGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 5011 0.68 0.850672
Target:  5'- uGCaAUUAUCAGCGUcaccacugaCGUGCUaggaccGCGGCa -3'
miRNA:   3'- -UG-UAGUAGUCGCG---------GCACGAgu----CGCCG- -5'
1949 3' -56.5 NC_001347.2 + 161948 0.68 0.850672
Target:  5'- ---cCAUCAGCGCCuugGCgUCGGgGGUg -3'
miRNA:   3'- uguaGUAGUCGCGGca-CG-AGUCgCCG- -5'
1949 3' -56.5 NC_001347.2 + 126153 0.68 0.858295
Target:  5'- gGCAUCuuuuccgCAcGC-CCGUGCUCucgcccgaacacGGCGGCg -3'
miRNA:   3'- -UGUAGua-----GU-CGcGGCACGAG------------UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 93654 0.68 0.858295
Target:  5'- gACcUCGUC-GCgGUCGUGCggaUCGGUGGCg -3'
miRNA:   3'- -UGuAGUAGuCG-CGGCACG---AGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 169120 0.68 0.865724
Target:  5'- gGCcUCGgccgCGcGCGCCGcGCUgCAGUGGCu -3'
miRNA:   3'- -UGuAGUa---GU-CGCGGCaCGA-GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 113624 0.68 0.872952
Target:  5'- cACGUCGUCgcAGCGCCG-GCUggagagcgagaGGcCGGCg -3'
miRNA:   3'- -UGUAGUAG--UCGCGGCaCGAg----------UC-GCCG- -5'
1949 3' -56.5 NC_001347.2 + 171459 0.68 0.879973
Target:  5'- cGCGcUCA--AGgGCCGUGcCUCGGUGGUc -3'
miRNA:   3'- -UGU-AGUagUCgCGGCAC-GAGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 174433 0.68 0.879973
Target:  5'- cGCGUCAgcggcaCGGUGCUGcGuCUCAGCuGGCc -3'
miRNA:   3'- -UGUAGUa-----GUCGCGGCaC-GAGUCG-CCG- -5'
1949 3' -56.5 NC_001347.2 + 8357 0.67 0.893381
Target:  5'- uGCGUU-UCGGCGCCGUGCaguuGCcGCg -3'
miRNA:   3'- -UGUAGuAGUCGCGGCACGagu-CGcCG- -5'
1949 3' -56.5 NC_001347.2 + 175050 0.67 0.893381
Target:  5'- aACGagAgCGGCGCCGUcUUCGGCGuGCa -3'
miRNA:   3'- -UGUagUaGUCGCGGCAcGAGUCGC-CG- -5'
1949 3' -56.5 NC_001347.2 + 207118 0.67 0.893381
Target:  5'- gACAguuccUCGUCGGCGCUuacggagggGUGUUUGGCGaGCc -3'
miRNA:   3'- -UGU-----AGUAGUCGCGG---------CACGAGUCGC-CG- -5'
1949 3' -56.5 NC_001347.2 + 163615 0.67 0.893381
Target:  5'- cCAgUGUCAGCGCCGaGC-C-GCGGCu -3'
miRNA:   3'- uGUaGUAGUCGCGGCaCGaGuCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 140035 0.67 0.899759
Target:  5'- -aGUCGUCGGCGCgGcaucccagcGC-CGGCGGUa -3'
miRNA:   3'- ugUAGUAGUCGCGgCa--------CGaGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 118875 0.67 0.899759
Target:  5'- cCGUCGaaUCAGCGUCGUccccacGCcCGGaCGGCa -3'
miRNA:   3'- uGUAGU--AGUCGCGGCA------CGaGUC-GCCG- -5'
1949 3' -56.5 NC_001347.2 + 183561 0.67 0.905916
Target:  5'- cACAUCGUCGGCGCCuagGUGCacgcugauguccUCGGgcuugacgcCGGUu -3'
miRNA:   3'- -UGUAGUAGUCGCGG---CACG------------AGUC---------GCCG- -5'
1949 3' -56.5 NC_001347.2 + 38698 0.67 0.905916
Target:  5'- cGCAgcuccCGUCcgAGCGCCGUcGCcuccUCGGCGcGCa -3'
miRNA:   3'- -UGUa----GUAG--UCGCGGCA-CG----AGUCGC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.