Results 41 - 60 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 85329 | 0.67 | 0.917555 |
Target: 5'- -gGUgAUCAGCGCCGccGC-CAGCGcCg -3' miRNA: 3'- ugUAgUAGUCGCGGCa-CGaGUCGCcG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 25409 | 0.67 | 0.917555 |
Target: 5'- cGCGUUGUUgAGCGCCuucUGCUacGCGGCg -3' miRNA: 3'- -UGUAGUAG-UCGCGGc--ACGAguCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 94337 | 0.66 | 0.921414 |
Target: 5'- gGCGUCGUCGgaggccgguGCGUCGUcCUCAucuccgccuggagcGCGGCc -3' miRNA: 3'- -UGUAGUAGU---------CGCGGCAcGAGU--------------CGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 182761 | 0.66 | 0.923034 |
Target: 5'- aACAUaCGUCGGCGCag-GU--AGCGGCu -3' miRNA: 3'- -UGUA-GUAGUCGCGgcaCGagUCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 81469 | 0.66 | 0.923034 |
Target: 5'- uGCA-CGgugaaagUGGCGUCGUcGCUCGGCGGg -3' miRNA: 3'- -UGUaGUa------GUCGCGGCA-CGAGUCGCCg -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 38740 | 0.66 | 0.923034 |
Target: 5'- aACGUCuGUCggAGCGCCG-GCUgaggCAGCaGCg -3' miRNA: 3'- -UGUAG-UAG--UCGCGGCaCGA----GUCGcCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 67504 | 0.66 | 0.923034 |
Target: 5'- cGCAcCGUCGGUGCCGgcgGCcacguccgUCA-CGGCg -3' miRNA: 3'- -UGUaGUAGUCGCGGCa--CG--------AGUcGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 225427 | 0.66 | 0.928285 |
Target: 5'- aACG-CGUCAGC-CCGcGCUCGGCaGaGCu -3' miRNA: 3'- -UGUaGUAGUCGcGGCaCGAGUCG-C-CG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 79060 | 0.66 | 0.928285 |
Target: 5'- gGCG-CGUCGGCGCCaaaugaGCcgcgaAGCGGCg -3' miRNA: 3'- -UGUaGUAGUCGCGGca----CGag---UCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 31594 | 0.66 | 0.928285 |
Target: 5'- uGCGUCGUCAaggacggcGUGuuGgacGCUguGUGGCg -3' miRNA: 3'- -UGUAGUAGU--------CGCggCa--CGAguCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 166213 | 0.66 | 0.928285 |
Target: 5'- cGCuucCGUCAGacagaGCUGUGCgccGCGGCg -3' miRNA: 3'- -UGua-GUAGUCg----CGGCACGaguCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 158311 | 0.66 | 0.929308 |
Target: 5'- aGCGUCAUCuucaacacgcaCGCCGaGCUCGugcacugcucgcucuGCGGCa -3' miRNA: 3'- -UGUAGUAGuc---------GCGGCaCGAGU---------------CGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 101827 | 0.66 | 0.931825 |
Target: 5'- cACAUCAccaaagaaacggucUCGGCGCCG-GC-CAccuaCGGCa -3' miRNA: 3'- -UGUAGU--------------AGUCGCGGCaCGaGUc---GCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 87627 | 0.66 | 0.933308 |
Target: 5'- aGCGaCggCGGCuGCUGuUGCUCgccAGCGGCg -3' miRNA: 3'- -UGUaGuaGUCG-CGGC-ACGAG---UCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 37679 | 0.66 | 0.933308 |
Target: 5'- gGCAUCGUugCAGCGuCCG-GUUUGGUuuGGCg -3' miRNA: 3'- -UGUAGUA--GUCGC-GGCaCGAGUCG--CCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 82810 | 0.66 | 0.933308 |
Target: 5'- gACGUgcUCAaaccGCGUCGUGagcgCGGCGGCu -3' miRNA: 3'- -UGUAguAGU----CGCGGCACga--GUCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 114441 | 0.66 | 0.933308 |
Target: 5'- cCGUCucagcCAGCGCCuGUGUcacccgcgcuUgAGCGGCg -3' miRNA: 3'- uGUAGua---GUCGCGG-CACG----------AgUCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 159445 | 0.66 | 0.936689 |
Target: 5'- uCGUCGUCuGCgGCCGcggccGCUCGaugacgaugucggcGCGGCg -3' miRNA: 3'- uGUAGUAGuCG-CGGCa----CGAGU--------------CGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 193085 | 0.66 | 0.937634 |
Target: 5'- gGCAUgucCGGcCGUCGcaagggcUGCUCGGCGGCc -3' miRNA: 3'- -UGUAguaGUC-GCGGC-------ACGAGUCGCCG- -5' |
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1949 | 3' | -56.5 | NC_001347.2 | + | 114312 | 0.66 | 0.938103 |
Target: 5'- -uGUC-UCGGaccaCGCCGUGCUUAGUcGCa -3' miRNA: 3'- ugUAGuAGUC----GCGGCACGAGUCGcCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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