miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1949 3' -56.5 NC_001347.2 + 85329 0.67 0.917555
Target:  5'- -gGUgAUCAGCGCCGccGC-CAGCGcCg -3'
miRNA:   3'- ugUAgUAGUCGCGGCa-CGaGUCGCcG- -5'
1949 3' -56.5 NC_001347.2 + 86256 0.69 0.809849
Target:  5'- gGCgAUC-UCGGCGCgCGaaGCuUCGGCGGCg -3'
miRNA:   3'- -UG-UAGuAGUCGCG-GCa-CG-AGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 87627 0.66 0.933308
Target:  5'- aGCGaCggCGGCuGCUGuUGCUCgccAGCGGCg -3'
miRNA:   3'- -UGUaGuaGUCG-CGGC-ACGAG---UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 93654 0.68 0.858295
Target:  5'- gACcUCGUC-GCgGUCGUGCggaUCGGUGGCg -3'
miRNA:   3'- -UGuAGUAGuCG-CGGCACG---AGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 94337 0.66 0.921414
Target:  5'- gGCGUCGUCGgaggccgguGCGUCGUcCUCAucuccgccuggagcGCGGCc -3'
miRNA:   3'- -UGUAGUAGU---------CGCGGCAcGAGU--------------CGCCG- -5'
1949 3' -56.5 NC_001347.2 + 95475 0.74 0.529807
Target:  5'- cGCGUCAcgCGGCGCCgGUG-UCGGCGGa -3'
miRNA:   3'- -UGUAGUa-GUCGCGG-CACgAGUCGCCg -5'
1949 3' -56.5 NC_001347.2 + 97897 0.75 0.520195
Target:  5'- cACGUCGUCuucGGCGUCGgGCggCGGCGGUa -3'
miRNA:   3'- -UGUAGUAG---UCGCGGCaCGa-GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 100512 0.69 0.842859
Target:  5'- aACAaCGUCGGUGCaCGUagagCAGCGGCc -3'
miRNA:   3'- -UGUaGUAGUCGCG-GCAcga-GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 101827 0.66 0.931825
Target:  5'- cACAUCAccaaagaaacggucUCGGCGCCG-GC-CAccuaCGGCa -3'
miRNA:   3'- -UGUAGU--------------AGUCGCGGCaCGaGUc---GCCG- -5'
1949 3' -56.5 NC_001347.2 + 107090 0.66 0.939958
Target:  5'- cGCGUaCGaCAcGCGCUGUGCUggcaucgaguggaaGGCGGCa -3'
miRNA:   3'- -UGUA-GUaGU-CGCGGCACGAg-------------UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 113624 0.68 0.872952
Target:  5'- cACGUCGUCgcAGCGCCG-GCUggagagcgagaGGcCGGCg -3'
miRNA:   3'- -UGUAGUAG--UCGCGGCaCGAg----------UC-GCCG- -5'
1949 3' -56.5 NC_001347.2 + 114312 0.66 0.938103
Target:  5'- -uGUC-UCGGaccaCGCCGUGCUUAGUcGCa -3'
miRNA:   3'- ugUAGuAGUC----GCGGCACGAGUCGcCG- -5'
1949 3' -56.5 NC_001347.2 + 114441 0.66 0.933308
Target:  5'- cCGUCucagcCAGCGCCuGUGUcacccgcgcuUgAGCGGCg -3'
miRNA:   3'- uGUAGua---GUCGCGG-CACG----------AgUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 118875 0.67 0.899759
Target:  5'- cCGUCGaaUCAGCGUCGUccccacGCcCGGaCGGCa -3'
miRNA:   3'- uGUAGU--AGUCGCGGCA------CGaGUC-GCCG- -5'
1949 3' -56.5 NC_001347.2 + 126153 0.68 0.858295
Target:  5'- gGCAUCuuuuccgCAcGC-CCGUGCUCucgcccgaacacGGCGGCg -3'
miRNA:   3'- -UGUAGua-----GU-CGcGGCACGAG------------UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 135205 0.69 0.842859
Target:  5'- -gGUCcgaGGCGCCGaccccgGCUgGGCGGCc -3'
miRNA:   3'- ugUAGuagUCGCGGCa-----CGAgUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 139321 0.72 0.638547
Target:  5'- -gAUCuggCGGCGuuGUGCgCGGCGGUg -3'
miRNA:   3'- ugUAGua-GUCGCggCACGaGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 140035 0.67 0.899759
Target:  5'- -aGUCGUCGGCGCgGcaucccagcGC-CGGCGGUa -3'
miRNA:   3'- ugUAGUAGUCGCGgCa--------CGaGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 142432 0.69 0.842859
Target:  5'- gGCGUCGgcgCGGCGuCCG-GCgUCGGgGGUg -3'
miRNA:   3'- -UGUAGUa--GUCGC-GGCaCG-AGUCgCCG- -5'
1949 3' -56.5 NC_001347.2 + 143801 0.66 0.946591
Target:  5'- cCAUCAucccgaaUCAGgGCCGcucGCUgaacaAGCGGCu -3'
miRNA:   3'- uGUAGU-------AGUCgCGGCa--CGAg----UCGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.