miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1949 3' -56.5 NC_001347.2 + 150574 0.75 0.473258
Target:  5'- gGCGUUuUCAGCGUCG-GCUCcggcaguaguGGCGGCg -3'
miRNA:   3'- -UGUAGuAGUCGCGGCaCGAG----------UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 150628 0.7 0.792391
Target:  5'- -aAUCA-CGGCGCCG-GCgguacugCGGCGGUu -3'
miRNA:   3'- ugUAGUaGUCGCGGCaCGa------GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 152801 0.66 0.942672
Target:  5'- gACGUgCAUguGCaaccgGCCGUcCUCGGCGuGCa -3'
miRNA:   3'- -UGUA-GUAguCG-----CGGCAcGAGUCGC-CG- -5'
1949 3' -56.5 NC_001347.2 + 153854 0.69 0.842859
Target:  5'- cACGUCcUCGuGUGCCGcGCcgAGCGGCg -3'
miRNA:   3'- -UGUAGuAGU-CGCGGCaCGagUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 155898 0.68 0.849899
Target:  5'- ----aGUCGGCGCCGgGUaaauaaaUCGGCGGUg -3'
miRNA:   3'- uguagUAGUCGCGGCaCG-------AGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 158085 0.73 0.588644
Target:  5'- uGCA-C-UCAGCGCCGcGCUgcgCGGCGGCc -3'
miRNA:   3'- -UGUaGuAGUCGCGGCaCGA---GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 158311 0.66 0.929308
Target:  5'- aGCGUCAUCuucaacacgcaCGCCGaGCUCGugcacugcucgcucuGCGGCa -3'
miRNA:   3'- -UGUAGUAGuc---------GCGGCaCGAGU---------------CGCCG- -5'
1949 3' -56.5 NC_001347.2 + 159445 0.66 0.936689
Target:  5'- uCGUCGUCuGCgGCCGcggccGCUCGaugacgaugucggcGCGGCg -3'
miRNA:   3'- uGUAGUAGuCG-CGGCa----CGAGU--------------CGCCG- -5'
1949 3' -56.5 NC_001347.2 + 160678 0.66 0.947015
Target:  5'- cACGUCAcCAcccuCGCCGcUGCcuacgcgaUCGGCGGCc -3'
miRNA:   3'- -UGUAGUaGUc---GCGGC-ACG--------AGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 160962 0.66 0.947015
Target:  5'- uACAg---CGGCGCCGccaUGC-CAGgGGCc -3'
miRNA:   3'- -UGUaguaGUCGCGGC---ACGaGUCgCCG- -5'
1949 3' -56.5 NC_001347.2 + 161948 0.68 0.850672
Target:  5'- ---cCAUCAGCGCCuugGCgUCGGgGGUg -3'
miRNA:   3'- uguaGUAGUCGCGGca-CG-AGUCgCCG- -5'
1949 3' -56.5 NC_001347.2 + 162022 0.79 0.303867
Target:  5'- cACAgguUCuGCGCCGUGCUCAGCuGCu -3'
miRNA:   3'- -UGUaguAGuCGCGGCACGAGUCGcCG- -5'
1949 3' -56.5 NC_001347.2 + 163615 0.67 0.893381
Target:  5'- cCAgUGUCAGCGCCGaGC-C-GCGGCu -3'
miRNA:   3'- uGUaGUAGUCGCGGCaCGaGuCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 163959 0.73 0.598592
Target:  5'- cGCG-CGUCAGCaGCugCGUGCUCAGaCGGUc -3'
miRNA:   3'- -UGUaGUAGUCG-CG--GCACGAGUC-GCCG- -5'
1949 3' -56.5 NC_001347.2 + 164731 0.66 0.942672
Target:  5'- uGCAaCGUCcaGGCGCUgGUGUUggcaggcaaCGGCGGCa -3'
miRNA:   3'- -UGUaGUAG--UCGCGG-CACGA---------GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 166213 0.66 0.928285
Target:  5'- cGCuucCGUCAGacagaGCUGUGCgccGCGGCg -3'
miRNA:   3'- -UGua-GUAGUCg----CGGCACGaguCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 169120 0.68 0.865724
Target:  5'- gGCcUCGgccgCGcGCGCCGcGCUgCAGUGGCu -3'
miRNA:   3'- -UGuAGUa---GU-CGCGGCaCGA-GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 170072 0.66 0.945736
Target:  5'- gGCGUCGUCAGUuggcgucccgagucGCCGU-CUCccgaCGGCa -3'
miRNA:   3'- -UGUAGUAGUCG--------------CGGCAcGAGuc--GCCG- -5'
1949 3' -56.5 NC_001347.2 + 171459 0.68 0.879973
Target:  5'- cGCGcUCA--AGgGCCGUGcCUCGGUGGUc -3'
miRNA:   3'- -UGU-AGUagUCgCGGCAC-GAGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 174433 0.68 0.879973
Target:  5'- cGCGUCAgcggcaCGGUGCUGcGuCUCAGCuGGCc -3'
miRNA:   3'- -UGUAGUa-----GUCGCGGCaC-GAGUCG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.