miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1949 3' -56.5 NC_001347.2 + 225427 0.66 0.928285
Target:  5'- aACG-CGUCAGC-CCGcGCUCGGCaGaGCu -3'
miRNA:   3'- -UGUaGUAGUCGcGGCaCGAGUCG-C-CG- -5'
1949 3' -56.5 NC_001347.2 + 212912 0.66 0.942672
Target:  5'- gGCAgUAUC-GUGuuGUGCUucaacguuacCGGCGGCa -3'
miRNA:   3'- -UGUaGUAGuCGCggCACGA----------GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 208709 0.73 0.628547
Target:  5'- cACGUCGgccacCAGCGCCGUGguCUCGGUcgccaGGCu -3'
miRNA:   3'- -UGUAGUa----GUCGCGGCAC--GAGUCG-----CCG- -5'
1949 3' -56.5 NC_001347.2 + 207118 0.67 0.893381
Target:  5'- gACAguuccUCGUCGGCGCUuacggagggGUGUUUGGCGaGCc -3'
miRNA:   3'- -UGU-----AGUAGUCGCGG---------CACGAGUCGC-CG- -5'
1949 3' -56.5 NC_001347.2 + 196129 0.71 0.717714
Target:  5'- cGCGaacUCAUCGGcCGCUGccUGC-CGGCGGCc -3'
miRNA:   3'- -UGU---AGUAGUC-GCGGC--ACGaGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 193085 0.66 0.937634
Target:  5'- gGCAUgucCGGcCGUCGcaagggcUGCUCGGCGGCc -3'
miRNA:   3'- -UGUAguaGUC-GCGGC-------ACGAGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 183561 0.67 0.905916
Target:  5'- cACAUCGUCGGCGCCuagGUGCacgcugauguccUCGGgcuugacgcCGGUu -3'
miRNA:   3'- -UGUAGUAGUCGCGG---CACG------------AGUC---------GCCG- -5'
1949 3' -56.5 NC_001347.2 + 182761 0.66 0.923034
Target:  5'- aACAUaCGUCGGCGCag-GU--AGCGGCu -3'
miRNA:   3'- -UGUA-GUAGUCGCGgcaCGagUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 181043 0.73 0.578728
Target:  5'- aACAUCcuUCAGCGUCGUccGCgcgGGCGGCa -3'
miRNA:   3'- -UGUAGu-AGUCGCGGCA--CGag-UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 175050 0.67 0.893381
Target:  5'- aACGagAgCGGCGCCGUcUUCGGCGuGCa -3'
miRNA:   3'- -UGUagUaGUCGCGGCAcGAGUCGC-CG- -5'
1949 3' -56.5 NC_001347.2 + 174433 0.68 0.879973
Target:  5'- cGCGUCAgcggcaCGGUGCUGcGuCUCAGCuGGCc -3'
miRNA:   3'- -UGUAGUa-----GUCGCGGCaC-GAGUCG-CCG- -5'
1949 3' -56.5 NC_001347.2 + 171459 0.68 0.879973
Target:  5'- cGCGcUCA--AGgGCCGUGcCUCGGUGGUc -3'
miRNA:   3'- -UGU-AGUagUCgCGGCAC-GAGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 170072 0.66 0.945736
Target:  5'- gGCGUCGUCAGUuggcgucccgagucGCCGU-CUCccgaCGGCa -3'
miRNA:   3'- -UGUAGUAGUCG--------------CGGCAcGAGuc--GCCG- -5'
1949 3' -56.5 NC_001347.2 + 169120 0.68 0.865724
Target:  5'- gGCcUCGgccgCGcGCGCCGcGCUgCAGUGGCu -3'
miRNA:   3'- -UGuAGUa---GU-CGCGGCaCGA-GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 166213 0.66 0.928285
Target:  5'- cGCuucCGUCAGacagaGCUGUGCgccGCGGCg -3'
miRNA:   3'- -UGua-GUAGUCg----CGGCACGaguCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 164731 0.66 0.942672
Target:  5'- uGCAaCGUCcaGGCGCUgGUGUUggcaggcaaCGGCGGCa -3'
miRNA:   3'- -UGUaGUAG--UCGCGG-CACGA---------GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 163959 0.73 0.598592
Target:  5'- cGCG-CGUCAGCaGCugCGUGCUCAGaCGGUc -3'
miRNA:   3'- -UGUaGUAGUCG-CG--GCACGAGUC-GCCG- -5'
1949 3' -56.5 NC_001347.2 + 163615 0.67 0.893381
Target:  5'- cCAgUGUCAGCGCCGaGC-C-GCGGCu -3'
miRNA:   3'- uGUaGUAGUCGCGGCaCGaGuCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 162022 0.79 0.303867
Target:  5'- cACAgguUCuGCGCCGUGCUCAGCuGCu -3'
miRNA:   3'- -UGUaguAGuCGCGGCACGAGUCGcCG- -5'
1949 3' -56.5 NC_001347.2 + 161948 0.68 0.850672
Target:  5'- ---cCAUCAGCGCCuugGCgUCGGgGGUg -3'
miRNA:   3'- uguaGUAGUCGCGGca-CG-AGUCgCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.