miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1949 3' -56.5 NC_001347.2 + 160962 0.66 0.947015
Target:  5'- uACAg---CGGCGCCGccaUGC-CAGgGGCc -3'
miRNA:   3'- -UGUaguaGUCGCGGC---ACGaGUCgCCG- -5'
1949 3' -56.5 NC_001347.2 + 160678 0.66 0.947015
Target:  5'- cACGUCAcCAcccuCGCCGcUGCcuacgcgaUCGGCGGCc -3'
miRNA:   3'- -UGUAGUaGUc---GCGGC-ACG--------AGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 159445 0.66 0.936689
Target:  5'- uCGUCGUCuGCgGCCGcggccGCUCGaugacgaugucggcGCGGCg -3'
miRNA:   3'- uGUAGUAGuCG-CGGCa----CGAGU--------------CGCCG- -5'
1949 3' -56.5 NC_001347.2 + 158311 0.66 0.929308
Target:  5'- aGCGUCAUCuucaacacgcaCGCCGaGCUCGugcacugcucgcucuGCGGCa -3'
miRNA:   3'- -UGUAGUAGuc---------GCGGCaCGAGU---------------CGCCG- -5'
1949 3' -56.5 NC_001347.2 + 158085 0.73 0.588644
Target:  5'- uGCA-C-UCAGCGCCGcGCUgcgCGGCGGCc -3'
miRNA:   3'- -UGUaGuAGUCGCGGCaCGA---GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 155898 0.68 0.849899
Target:  5'- ----aGUCGGCGCCGgGUaaauaaaUCGGCGGUg -3'
miRNA:   3'- uguagUAGUCGCGGCaCG-------AGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 153854 0.69 0.842859
Target:  5'- cACGUCcUCGuGUGCCGcGCcgAGCGGCg -3'
miRNA:   3'- -UGUAGuAGU-CGCGGCaCGagUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 152801 0.66 0.942672
Target:  5'- gACGUgCAUguGCaaccgGCCGUcCUCGGCGuGCa -3'
miRNA:   3'- -UGUA-GUAguCG-----CGGCAcGAGUCGC-CG- -5'
1949 3' -56.5 NC_001347.2 + 150628 0.7 0.792391
Target:  5'- -aAUCA-CGGCGCCG-GCgguacugCGGCGGUu -3'
miRNA:   3'- ugUAGUaGUCGCGGCaCGa------GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 150574 0.75 0.473258
Target:  5'- gGCGUUuUCAGCGUCG-GCUCcggcaguaguGGCGGCg -3'
miRNA:   3'- -UGUAGuAGUCGCGGCaCGAG----------UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 143801 0.66 0.946591
Target:  5'- cCAUCAucccgaaUCAGgGCCGcucGCUgaacaAGCGGCu -3'
miRNA:   3'- uGUAGU-------AGUCgCGGCa--CGAg----UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 142432 0.69 0.842859
Target:  5'- gGCGUCGgcgCGGCGuCCG-GCgUCGGgGGUg -3'
miRNA:   3'- -UGUAGUa--GUCGC-GGCaCG-AGUCgCCG- -5'
1949 3' -56.5 NC_001347.2 + 140035 0.67 0.899759
Target:  5'- -aGUCGUCGGCGCgGcaucccagcGC-CGGCGGUa -3'
miRNA:   3'- ugUAGUAGUCGCGgCa--------CGaGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 139321 0.72 0.638547
Target:  5'- -gAUCuggCGGCGuuGUGCgCGGCGGUg -3'
miRNA:   3'- ugUAGua-GUCGCggCACGaGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 135205 0.69 0.842859
Target:  5'- -gGUCcgaGGCGCCGaccccgGCUgGGCGGCc -3'
miRNA:   3'- ugUAGuagUCGCGGCa-----CGAgUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 126153 0.68 0.858295
Target:  5'- gGCAUCuuuuccgCAcGC-CCGUGCUCucgcccgaacacGGCGGCg -3'
miRNA:   3'- -UGUAGua-----GU-CGcGGCACGAG------------UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 118875 0.67 0.899759
Target:  5'- cCGUCGaaUCAGCGUCGUccccacGCcCGGaCGGCa -3'
miRNA:   3'- uGUAGU--AGUCGCGGCA------CGaGUC-GCCG- -5'
1949 3' -56.5 NC_001347.2 + 114441 0.66 0.933308
Target:  5'- cCGUCucagcCAGCGCCuGUGUcacccgcgcuUgAGCGGCg -3'
miRNA:   3'- uGUAGua---GUCGCGG-CACG----------AgUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 114312 0.66 0.938103
Target:  5'- -uGUC-UCGGaccaCGCCGUGCUUAGUcGCa -3'
miRNA:   3'- ugUAGuAGUC----GCGGCACGAGUCGcCG- -5'
1949 3' -56.5 NC_001347.2 + 113624 0.68 0.872952
Target:  5'- cACGUCGUCgcAGCGCCG-GCUggagagcgagaGGcCGGCg -3'
miRNA:   3'- -UGUAGUAG--UCGCGGCaCGAg----------UC-GCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.