miRNA display CGI


Results 41 - 60 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1949 3' -56.5 NC_001347.2 + 107090 0.66 0.939958
Target:  5'- cGCGUaCGaCAcGCGCUGUGCUggcaucgaguggaaGGCGGCa -3'
miRNA:   3'- -UGUA-GUaGU-CGCGGCACGAg-------------UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 101827 0.66 0.931825
Target:  5'- cACAUCAccaaagaaacggucUCGGCGCCG-GC-CAccuaCGGCa -3'
miRNA:   3'- -UGUAGU--------------AGUCGCGGCaCGaGUc---GCCG- -5'
1949 3' -56.5 NC_001347.2 + 100512 0.69 0.842859
Target:  5'- aACAaCGUCGGUGCaCGUagagCAGCGGCc -3'
miRNA:   3'- -UGUaGUAGUCGCG-GCAcga-GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 97897 0.75 0.520195
Target:  5'- cACGUCGUCuucGGCGUCGgGCggCGGCGGUa -3'
miRNA:   3'- -UGUAGUAG---UCGCGGCaCGa-GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 95475 0.74 0.529807
Target:  5'- cGCGUCAcgCGGCGCCgGUG-UCGGCGGa -3'
miRNA:   3'- -UGUAGUa-GUCGCGG-CACgAGUCGCCg -5'
1949 3' -56.5 NC_001347.2 + 94337 0.66 0.921414
Target:  5'- gGCGUCGUCGgaggccgguGCGUCGUcCUCAucuccgccuggagcGCGGCc -3'
miRNA:   3'- -UGUAGUAGU---------CGCGGCAcGAGU--------------CGCCG- -5'
1949 3' -56.5 NC_001347.2 + 93654 0.68 0.858295
Target:  5'- gACcUCGUC-GCgGUCGUGCggaUCGGUGGCg -3'
miRNA:   3'- -UGuAGUAGuCG-CGGCACG---AGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 87627 0.66 0.933308
Target:  5'- aGCGaCggCGGCuGCUGuUGCUCgccAGCGGCg -3'
miRNA:   3'- -UGUaGuaGUCG-CGGC-ACGAG---UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 86256 0.69 0.809849
Target:  5'- gGCgAUC-UCGGCGCgCGaaGCuUCGGCGGCg -3'
miRNA:   3'- -UG-UAGuAGUCGCG-GCa-CG-AGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 85329 0.67 0.917555
Target:  5'- -gGUgAUCAGCGCCGccGC-CAGCGcCg -3'
miRNA:   3'- ugUAgUAGUCGCGGCa-CGaGUCGCcG- -5'
1949 3' -56.5 NC_001347.2 + 82810 0.66 0.933308
Target:  5'- gACGUgcUCAaaccGCGUCGUGagcgCGGCGGCu -3'
miRNA:   3'- -UGUAguAGU----CGCGGCACga--GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 81469 0.66 0.923034
Target:  5'- uGCA-CGgugaaagUGGCGUCGUcGCUCGGCGGg -3'
miRNA:   3'- -UGUaGUa------GUCGCGGCA-CGAGUCGCCg -5'
1949 3' -56.5 NC_001347.2 + 79060 0.66 0.928285
Target:  5'- gGCG-CGUCGGCGCCaaaugaGCcgcgaAGCGGCg -3'
miRNA:   3'- -UGUaGUAGUCGCGGca----CGag---UCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 76787 0.71 0.707975
Target:  5'- aGCGUCucguggcuaaCGGCGCUGUcaGC-CAGCGGCa -3'
miRNA:   3'- -UGUAGua--------GUCGCGGCA--CGaGUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 75404 0.69 0.818351
Target:  5'- aGCGggagCGGCgGCCGUgGCggcggCAGCGGCg -3'
miRNA:   3'- -UGUaguaGUCG-CGGCA-CGa----GUCGCCG- -5'
1949 3' -56.5 NC_001347.2 + 71705 0.66 0.945736
Target:  5'- gACAUCAUCGcCGCCGacccgcgugugcccUGCcUCA-CGGCu -3'
miRNA:   3'- -UGUAGUAGUcGCGGC--------------ACG-AGUcGCCG- -5'
1949 3' -56.5 NC_001347.2 + 67504 0.66 0.923034
Target:  5'- cGCAcCGUCGGUGCCGgcgGCcacguccgUCA-CGGCg -3'
miRNA:   3'- -UGUaGUAGUCGCGGCa--CG--------AGUcGCCG- -5'
1949 3' -56.5 NC_001347.2 + 38740 0.66 0.923034
Target:  5'- aACGUCuGUCggAGCGCCG-GCUgaggCAGCaGCg -3'
miRNA:   3'- -UGUAG-UAG--UCGCGGCaCGA----GUCGcCG- -5'
1949 3' -56.5 NC_001347.2 + 38698 0.67 0.905916
Target:  5'- cGCAgcuccCGUCcgAGCGCCGUcGCcuccUCGGCGcGCa -3'
miRNA:   3'- -UGUa----GUAG--UCGCGGCA-CG----AGUCGC-CG- -5'
1949 3' -56.5 NC_001347.2 + 38231 0.69 0.834863
Target:  5'- cCAUCAccgUCGGCGCCGcUGCUgCuGCcGCg -3'
miRNA:   3'- uGUAGU---AGUCGCGGC-ACGA-GuCGcCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.