Results 1 - 20 of 70 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 162022 | 0.79 | 0.303867 |
Target: 5'- cACAgguUCuGCGCCGUGCUCAGCuGCu -3' miRNA: 3'- -UGUaguAGuCGCGGCACGAGUCGcCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 159445 | 0.66 | 0.936689 |
Target: 5'- uCGUCGUCuGCgGCCGcggccGCUCGaugacgaugucggcGCGGCg -3' miRNA: 3'- uGUAGUAGuCG-CGGCa----CGAGU--------------CGCCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 114441 | 0.66 | 0.933308 |
Target: 5'- cCGUCucagcCAGCGCCuGUGUcacccgcgcuUgAGCGGCg -3' miRNA: 3'- uGUAGua---GUCGCGG-CACG----------AgUCGCCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 87627 | 0.66 | 0.933308 |
Target: 5'- aGCGaCggCGGCuGCUGuUGCUCgccAGCGGCg -3' miRNA: 3'- -UGUaGuaGUCG-CGGC-ACGAG---UCGCCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 37679 | 0.66 | 0.933308 |
Target: 5'- gGCAUCGUugCAGCGuCCG-GUUUGGUuuGGCg -3' miRNA: 3'- -UGUAGUA--GUCGC-GGCaCGAGUCG--CCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 82810 | 0.66 | 0.933308 |
Target: 5'- gACGUgcUCAaaccGCGUCGUGagcgCGGCGGCu -3' miRNA: 3'- -UGUAguAGU----CGCGGCACga--GUCGCCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 101827 | 0.66 | 0.931825 |
Target: 5'- cACAUCAccaaagaaacggucUCGGCGCCG-GC-CAccuaCGGCa -3' miRNA: 3'- -UGUAGU--------------AGUCGCGGCaCGaGUc---GCCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 158311 | 0.66 | 0.929308 |
Target: 5'- aGCGUCAUCuucaacacgcaCGCCGaGCUCGugcacugcucgcucuGCGGCa -3' miRNA: 3'- -UGUAGUAGuc---------GCGGCaCGAGU---------------CGCCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 31594 | 0.66 | 0.928285 |
Target: 5'- uGCGUCGUCAaggacggcGUGuuGgacGCUguGUGGCg -3' miRNA: 3'- -UGUAGUAGU--------CGCggCa--CGAguCGCCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 114312 | 0.66 | 0.938103 |
Target: 5'- -uGUC-UCGGaccaCGCCGUGCUUAGUcGCa -3' miRNA: 3'- ugUAGuAGUC----GCGGCACGAGUCGcCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 193085 | 0.66 | 0.937634 |
Target: 5'- gGCAUgucCGGcCGUCGcaagggcUGCUCGGCGGCc -3' miRNA: 3'- -UGUAguaGUC-GCGGC-------ACGAGUCGCCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 17015 | 0.66 | 0.938103 |
Target: 5'- cCAUUuggcaGGCGCgCGUGgUCcGCGGCg -3' miRNA: 3'- uGUAGuag--UCGCG-GCACgAGuCGCCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 160962 | 0.66 | 0.947015 |
Target: 5'- uACAg---CGGCGCCGccaUGC-CAGgGGCc -3' miRNA: 3'- -UGUaguaGUCGCGGC---ACGaGUCgCCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 143801 | 0.66 | 0.946591 |
Target: 5'- cCAUCAucccgaaUCAGgGCCGcucGCUgaacaAGCGGCu -3' miRNA: 3'- uGUAGU-------AGUCgCGGCa--CGAg----UCGCCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 170072 | 0.66 | 0.945736 |
Target: 5'- gGCGUCGUCAGUuggcgucccgagucGCCGU-CUCccgaCGGCa -3' miRNA: 3'- -UGUAGUAGUCG--------------CGGCAcGAGuc--GCCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 71705 | 0.66 | 0.945736 |
Target: 5'- gACAUCAUCGcCGCCGacccgcgugugcccUGCcUCA-CGGCu -3' miRNA: 3'- -UGUAGUAGUcGCGGC--------------ACG-AGUcGCCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 212912 | 0.66 | 0.942672 |
Target: 5'- gGCAgUAUC-GUGuuGUGCUucaacguuacCGGCGGCa -3' miRNA: 3'- -UGUaGUAGuCGCggCACGA----------GUCGCCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 152801 | 0.66 | 0.942672 |
Target: 5'- gACGUgCAUguGCaaccgGCCGUcCUCGGCGuGCa -3' miRNA: 3'- -UGUA-GUAguCG-----CGGCAcGAGUCGC-CG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 164731 | 0.66 | 0.942672 |
Target: 5'- uGCAaCGUCcaGGCGCUgGUGUUggcaggcaaCGGCGGCa -3' miRNA: 3'- -UGUaGUAG--UCGCGG-CACGA---------GUCGCCG- -5' |
|||||||
1949 | 3' | -56.5 | NC_001347.2 | + | 107090 | 0.66 | 0.939958 |
Target: 5'- cGCGUaCGaCAcGCGCUGUGCUggcaucgaguggaaGGCGGCa -3' miRNA: 3'- -UGUA-GUaGU-CGCGGCACGAg-------------UCGCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home