miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1949 5' -57.8 NC_001347.2 + 126502 0.66 0.912064
Target:  5'- -cGCuUUCGUGGCGUACGCCGucgcgcgcaaccGCCGc- -3'
miRNA:   3'- gaUG-GAGUACUGCGUGCGGC------------CGGCaa -5'
1949 5' -57.8 NC_001347.2 + 183480 0.66 0.912064
Target:  5'- -gGCCUCGggaGACGCGCGCa-GCCc-- -3'
miRNA:   3'- gaUGGAGUa--CUGCGUGCGgcCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 173985 0.66 0.906191
Target:  5'- gUGCCUgGgaACGCGCGCaCGGCgCGg- -3'
miRNA:   3'- gAUGGAgUacUGCGUGCG-GCCG-GCaa -5'
1949 5' -57.8 NC_001347.2 + 24653 0.66 0.906191
Target:  5'- -gGCCUCcUGGCGCACaucCCGGCg--- -3'
miRNA:   3'- gaUGGAGuACUGCGUGc--GGCCGgcaa -5'
1949 5' -57.8 NC_001347.2 + 91001 0.66 0.900098
Target:  5'- gCUACCagAUGAUGCACcccgaacucggGCUGGCCc-- -3'
miRNA:   3'- -GAUGGagUACUGCGUG-----------CGGCCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 87059 0.66 0.893786
Target:  5'- -cACCUCGUccaGAC-CGCGCCGGUCc-- -3'
miRNA:   3'- gaUGGAGUA---CUGcGUGCGGCCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 103964 0.66 0.88726
Target:  5'- -cACUcagUCAUGACGCugGCC-GCCa-- -3'
miRNA:   3'- gaUGG---AGUACUGCGugCGGcCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 41694 0.66 0.88726
Target:  5'- -----aCGUGGCGCguggAUGCCGGCCGa- -3'
miRNA:   3'- gauggaGUACUGCG----UGCGGCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 125296 0.66 0.886596
Target:  5'- -gGCgUCAgUGGCGCaaccgucgcagccGCGCCGGCCu-- -3'
miRNA:   3'- gaUGgAGU-ACUGCG-------------UGCGGCCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 158170 0.66 0.879837
Target:  5'- -cGCCaUCugGACGCGCGCUcgcugguGGCCGUg -3'
miRNA:   3'- gaUGG-AGuaCUGCGUGCGG-------CCGGCAa -5'
1949 5' -57.8 NC_001347.2 + 207645 0.67 0.873578
Target:  5'- gUACCUCGgcGACGCuccAUGCCGGCg--- -3'
miRNA:   3'- gAUGGAGUa-CUGCG---UGCGGCCGgcaa -5'
1949 5' -57.8 NC_001347.2 + 63222 0.67 0.86643
Target:  5'- -gGCCgc-UGACGCuguuuACGCCGGCCu-- -3'
miRNA:   3'- gaUGGaguACUGCG-----UGCGGCCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 85232 0.67 0.859084
Target:  5'- gCUACCUCGUacACGUugaGCCGGCCc-- -3'
miRNA:   3'- -GAUGGAGUAc-UGCGug-CGGCCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 96649 0.67 0.851546
Target:  5'- -aACCUgCAccGCGuCACGCUGGCCGa- -3'
miRNA:   3'- gaUGGA-GUacUGC-GUGCGGCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 96186 0.67 0.851546
Target:  5'- -gGCCUCggGcACGgGCGUggCGGCCGUa -3'
miRNA:   3'- gaUGGAGuaC-UGCgUGCG--GCCGGCAa -5'
1949 5' -57.8 NC_001347.2 + 190589 0.67 0.843821
Target:  5'- --uCCUCGUGugGCAaGuuGGCCa-- -3'
miRNA:   3'- gauGGAGUACugCGUgCggCCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 100871 0.67 0.843821
Target:  5'- -aGCCgaggCGgcgcGGCGCAgCGCCGGCCa-- -3'
miRNA:   3'- gaUGGa---GUa---CUGCGU-GCGGCCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 124881 0.68 0.827836
Target:  5'- -cGCCUCccGAgGCACGUCggGGCUGUg -3'
miRNA:   3'- gaUGGAGuaCUgCGUGCGG--CCGGCAa -5'
1949 5' -57.8 NC_001347.2 + 62338 0.68 0.81959
Target:  5'- -gACCUaCAUGcugGCGCGCCGGCgGg- -3'
miRNA:   3'- gaUGGA-GUACug-CGUGCGGCCGgCaa -5'
1949 5' -57.8 NC_001347.2 + 168793 0.68 0.802625
Target:  5'- -cGCCaUCAUgGACGCGCGCgcgguggccaaaCGGCCGc- -3'
miRNA:   3'- gaUGG-AGUA-CUGCGUGCG------------GCCGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.