miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1949 5' -57.8 NC_001347.2 + 153215 0.68 0.79742
Target:  5'- gUGCaggUCGUGcagcgugaggcgcggGCGCGCGUCGGCCGg- -3'
miRNA:   3'- gAUGg--AGUAC---------------UGCGUGCGGCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 142046 0.68 0.793921
Target:  5'- gCUACCUCuUGGCuaCGCGuCUGGCCGa- -3'
miRNA:   3'- -GAUGGAGuACUGc-GUGC-GGCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 147853 0.69 0.785081
Target:  5'- -gACCUCAUGAgcggccUGgGCGCCgcgggaaaGGCCGUUg -3'
miRNA:   3'- gaUGGAGUACU------GCgUGCGG--------CCGGCAA- -5'
1949 5' -57.8 NC_001347.2 + 62749 0.69 0.76702
Target:  5'- -cGCCcCGUGACGacgaGCGgCGGCCGa- -3'
miRNA:   3'- gaUGGaGUACUGCg---UGCgGCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 154298 0.69 0.74851
Target:  5'- ---gCUCAUGACGCcggUGCCGGCCc-- -3'
miRNA:   3'- gaugGAGUACUGCGu--GCGGCCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 27137 0.69 0.74851
Target:  5'- -gGCCUUAUGugGCuGCGCCGuuuuGCUGUc -3'
miRNA:   3'- gaUGGAGUACugCG-UGCGGC----CGGCAa -5'
1949 5' -57.8 NC_001347.2 + 16375 0.69 0.74851
Target:  5'- gCUGCUgcgucacggUCAUGACGCcgacGCGuuGGCCGc- -3'
miRNA:   3'- -GAUGG---------AGUACUGCG----UGCggCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 18477 0.69 0.739106
Target:  5'- -gGCCUUuUGACcaCAUGCCGGCCGc- -3'
miRNA:   3'- gaUGGAGuACUGc-GUGCGGCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 104541 0.7 0.729616
Target:  5'- gUGCCUCc---UGCAUGCUGGCCGUc -3'
miRNA:   3'- gAUGGAGuacuGCGUGCGGCCGGCAa -5'
1949 5' -57.8 NC_001347.2 + 201795 0.7 0.710405
Target:  5'- -cGCCUCGcuuagaGCGCugGCCGGCUGc- -3'
miRNA:   3'- gaUGGAGUac----UGCGugCGGCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 149878 0.7 0.700702
Target:  5'- uUGCCUac-GGCGCAgGgCGGCCGUUu -3'
miRNA:   3'- gAUGGAguaCUGCGUgCgGCCGGCAA- -5'
1949 5' -57.8 NC_001347.2 + 166006 0.7 0.700702
Target:  5'- -gACCUCcgguacgGACGuCGCGCCuGCCGUUg -3'
miRNA:   3'- gaUGGAGua-----CUGC-GUGCGGcCGGCAA- -5'
1949 5' -57.8 NC_001347.2 + 181436 0.7 0.690944
Target:  5'- gCUGCCUCGaaacgugaUGACGCACGaggaGGCUGa- -3'
miRNA:   3'- -GAUGGAGU--------ACUGCGUGCgg--CCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 169120 0.71 0.641628
Target:  5'- -gGCCUCGgccGCGCGCGCCGcGCUGc- -3'
miRNA:   3'- gaUGGAGUac-UGCGUGCGGC-CGGCaa -5'
1949 5' -57.8 NC_001347.2 + 99988 0.71 0.631714
Target:  5'- -cGCCaUCAUGACGCGgGCgCGGUCGc- -3'
miRNA:   3'- gaUGG-AGUACUGCGUgCG-GCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 65871 0.72 0.592128
Target:  5'- -gGCCUUcgGcACGCugGCgGGCCGa- -3'
miRNA:   3'- gaUGGAGuaC-UGCGugCGgCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 2610 0.73 0.562702
Target:  5'- aCUACCUgCAaGACGCccgACGCCGcGCCGa- -3'
miRNA:   3'- -GAUGGA-GUaCUGCG---UGCGGC-CGGCaa -5'
1949 5' -57.8 NC_001347.2 + 193165 0.75 0.44158
Target:  5'- uCUGCCUgGgcACGCGCGUCGGCCGc- -3'
miRNA:   3'- -GAUGGAgUacUGCGUGCGGCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 96500 0.8 0.239615
Target:  5'- uCUACCUCAUGGgcCGCgacaagGCGCUGGCCGUg -3'
miRNA:   3'- -GAUGGAGUACU--GCG------UGCGGCCGGCAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.