miRNA display CGI


Results 21 - 39 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1949 5' -57.8 NC_001347.2 + 124881 0.68 0.827836
Target:  5'- -cGCCUCccGAgGCACGUCggGGCUGUg -3'
miRNA:   3'- gaUGGAGuaCUgCGUGCGG--CCGGCAa -5'
1949 5' -57.8 NC_001347.2 + 125296 0.66 0.886596
Target:  5'- -gGCgUCAgUGGCGCaaccgucgcagccGCGCCGGCCu-- -3'
miRNA:   3'- gaUGgAGU-ACUGCG-------------UGCGGCCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 126502 0.66 0.912064
Target:  5'- -cGCuUUCGUGGCGUACGCCGucgcgcgcaaccGCCGc- -3'
miRNA:   3'- gaUG-GAGUACUGCGUGCGGC------------CGGCaa -5'
1949 5' -57.8 NC_001347.2 + 142046 0.68 0.793921
Target:  5'- gCUACCUCuUGGCuaCGCGuCUGGCCGa- -3'
miRNA:   3'- -GAUGGAGuACUGc-GUGC-GGCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 147853 0.69 0.785081
Target:  5'- -gACCUCAUGAgcggccUGgGCGCCgcgggaaaGGCCGUUg -3'
miRNA:   3'- gaUGGAGUACU------GCgUGCGG--------CCGGCAA- -5'
1949 5' -57.8 NC_001347.2 + 149878 0.7 0.700702
Target:  5'- uUGCCUac-GGCGCAgGgCGGCCGUUu -3'
miRNA:   3'- gAUGGAguaCUGCGUgCgGCCGGCAA- -5'
1949 5' -57.8 NC_001347.2 + 153215 0.68 0.79742
Target:  5'- gUGCaggUCGUGcagcgugaggcgcggGCGCGCGUCGGCCGg- -3'
miRNA:   3'- gAUGg--AGUAC---------------UGCGUGCGGCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 154298 0.69 0.74851
Target:  5'- ---gCUCAUGACGCcggUGCCGGCCc-- -3'
miRNA:   3'- gaugGAGUACUGCGu--GCGGCCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 158170 0.66 0.879837
Target:  5'- -cGCCaUCugGACGCGCGCUcgcugguGGCCGUg -3'
miRNA:   3'- gaUGG-AGuaCUGCGUGCGG-------CCGGCAa -5'
1949 5' -57.8 NC_001347.2 + 166006 0.7 0.700702
Target:  5'- -gACCUCcgguacgGACGuCGCGCCuGCCGUUg -3'
miRNA:   3'- gaUGGAGua-----CUGC-GUGCGGcCGGCAA- -5'
1949 5' -57.8 NC_001347.2 + 168793 0.68 0.802625
Target:  5'- -cGCCaUCAUgGACGCGCGCgcgguggccaaaCGGCCGc- -3'
miRNA:   3'- gaUGG-AGUA-CUGCGUGCG------------GCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 169120 0.71 0.641628
Target:  5'- -gGCCUCGgccGCGCGCGCCGcGCUGc- -3'
miRNA:   3'- gaUGGAGUac-UGCGUGCGGC-CGGCaa -5'
1949 5' -57.8 NC_001347.2 + 173985 0.66 0.906191
Target:  5'- gUGCCUgGgaACGCGCGCaCGGCgCGg- -3'
miRNA:   3'- gAUGGAgUacUGCGUGCG-GCCG-GCaa -5'
1949 5' -57.8 NC_001347.2 + 181436 0.7 0.690944
Target:  5'- gCUGCCUCGaaacgugaUGACGCACGaggaGGCUGa- -3'
miRNA:   3'- -GAUGGAGU--------ACUGCGUGCgg--CCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 183480 0.66 0.912064
Target:  5'- -gGCCUCGggaGACGCGCGCa-GCCc-- -3'
miRNA:   3'- gaUGGAGUa--CUGCGUGCGgcCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 190589 0.67 0.843821
Target:  5'- --uCCUCGUGugGCAaGuuGGCCa-- -3'
miRNA:   3'- gauGGAGUACugCGUgCggCCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 193165 0.75 0.44158
Target:  5'- uCUGCCUgGgcACGCGCGUCGGCCGc- -3'
miRNA:   3'- -GAUGGAgUacUGCGUGCGGCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 201795 0.7 0.710405
Target:  5'- -cGCCUCGcuuagaGCGCugGCCGGCUGc- -3'
miRNA:   3'- gaUGGAGUac----UGCGugCGGCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 207645 0.67 0.873578
Target:  5'- gUACCUCGgcGACGCuccAUGCCGGCg--- -3'
miRNA:   3'- gAUGGAGUa-CUGCG---UGCGGCCGgcaa -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.