Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 207645 | 0.67 | 0.873578 |
Target: 5'- gUACCUCGgcGACGCuccAUGCCGGCg--- -3' miRNA: 3'- gAUGGAGUa-CUGCG---UGCGGCCGgcaa -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 201795 | 0.7 | 0.710405 |
Target: 5'- -cGCCUCGcuuagaGCGCugGCCGGCUGc- -3' miRNA: 3'- gaUGGAGUac----UGCGugCGGCCGGCaa -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 193165 | 0.75 | 0.44158 |
Target: 5'- uCUGCCUgGgcACGCGCGUCGGCCGc- -3' miRNA: 3'- -GAUGGAgUacUGCGUGCGGCCGGCaa -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 190589 | 0.67 | 0.843821 |
Target: 5'- --uCCUCGUGugGCAaGuuGGCCa-- -3' miRNA: 3'- gauGGAGUACugCGUgCggCCGGcaa -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 183480 | 0.66 | 0.912064 |
Target: 5'- -gGCCUCGggaGACGCGCGCa-GCCc-- -3' miRNA: 3'- gaUGGAGUa--CUGCGUGCGgcCGGcaa -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 181436 | 0.7 | 0.690944 |
Target: 5'- gCUGCCUCGaaacgugaUGACGCACGaggaGGCUGa- -3' miRNA: 3'- -GAUGGAGU--------ACUGCGUGCgg--CCGGCaa -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 173985 | 0.66 | 0.906191 |
Target: 5'- gUGCCUgGgaACGCGCGCaCGGCgCGg- -3' miRNA: 3'- gAUGGAgUacUGCGUGCG-GCCG-GCaa -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 169120 | 0.71 | 0.641628 |
Target: 5'- -gGCCUCGgccGCGCGCGCCGcGCUGc- -3' miRNA: 3'- gaUGGAGUac-UGCGUGCGGC-CGGCaa -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 168793 | 0.68 | 0.802625 |
Target: 5'- -cGCCaUCAUgGACGCGCGCgcgguggccaaaCGGCCGc- -3' miRNA: 3'- gaUGG-AGUA-CUGCGUGCG------------GCCGGCaa -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 166006 | 0.7 | 0.700702 |
Target: 5'- -gACCUCcgguacgGACGuCGCGCCuGCCGUUg -3' miRNA: 3'- gaUGGAGua-----CUGC-GUGCGGcCGGCAA- -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 158170 | 0.66 | 0.879837 |
Target: 5'- -cGCCaUCugGACGCGCGCUcgcugguGGCCGUg -3' miRNA: 3'- gaUGG-AGuaCUGCGUGCGG-------CCGGCAa -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 154298 | 0.69 | 0.74851 |
Target: 5'- ---gCUCAUGACGCcggUGCCGGCCc-- -3' miRNA: 3'- gaugGAGUACUGCGu--GCGGCCGGcaa -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 153215 | 0.68 | 0.79742 |
Target: 5'- gUGCaggUCGUGcagcgugaggcgcggGCGCGCGUCGGCCGg- -3' miRNA: 3'- gAUGg--AGUAC---------------UGCGUGCGGCCGGCaa -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 149878 | 0.7 | 0.700702 |
Target: 5'- uUGCCUac-GGCGCAgGgCGGCCGUUu -3' miRNA: 3'- gAUGGAguaCUGCGUgCgGCCGGCAA- -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 147853 | 0.69 | 0.785081 |
Target: 5'- -gACCUCAUGAgcggccUGgGCGCCgcgggaaaGGCCGUUg -3' miRNA: 3'- gaUGGAGUACU------GCgUGCGG--------CCGGCAA- -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 142046 | 0.68 | 0.793921 |
Target: 5'- gCUACCUCuUGGCuaCGCGuCUGGCCGa- -3' miRNA: 3'- -GAUGGAGuACUGc-GUGC-GGCCGGCaa -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 126502 | 0.66 | 0.912064 |
Target: 5'- -cGCuUUCGUGGCGUACGCCGucgcgcgcaaccGCCGc- -3' miRNA: 3'- gaUG-GAGUACUGCGUGCGGC------------CGGCaa -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 125296 | 0.66 | 0.886596 |
Target: 5'- -gGCgUCAgUGGCGCaaccgucgcagccGCGCCGGCCu-- -3' miRNA: 3'- gaUGgAGU-ACUGCG-------------UGCGGCCGGcaa -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 124881 | 0.68 | 0.827836 |
Target: 5'- -cGCCUCccGAgGCACGUCggGGCUGUg -3' miRNA: 3'- gaUGGAGuaCUgCGUGCGG--CCGGCAa -5' |
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1949 | 5' | -57.8 | NC_001347.2 | + | 104541 | 0.7 | 0.729616 |
Target: 5'- gUGCCUCc---UGCAUGCUGGCCGUc -3' miRNA: 3'- gAUGGAGuacuGCGUGCGGCCGGCAa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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