miRNA display CGI


Results 21 - 39 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1949 5' -57.8 NC_001347.2 + 103964 0.66 0.88726
Target:  5'- -cACUcagUCAUGACGCugGCC-GCCa-- -3'
miRNA:   3'- gaUGG---AGUACUGCGugCGGcCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 100871 0.67 0.843821
Target:  5'- -aGCCgaggCGgcgcGGCGCAgCGCCGGCCa-- -3'
miRNA:   3'- gaUGGa---GUa---CUGCGU-GCGGCCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 99988 0.71 0.631714
Target:  5'- -cGCCaUCAUGACGCGgGCgCGGUCGc- -3'
miRNA:   3'- gaUGG-AGUACUGCGUgCG-GCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 96649 0.67 0.851546
Target:  5'- -aACCUgCAccGCGuCACGCUGGCCGa- -3'
miRNA:   3'- gaUGGA-GUacUGC-GUGCGGCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 96500 0.8 0.239615
Target:  5'- uCUACCUCAUGGgcCGCgacaagGCGCUGGCCGUg -3'
miRNA:   3'- -GAUGGAGUACU--GCG------UGCGGCCGGCAa -5'
1949 5' -57.8 NC_001347.2 + 96186 0.67 0.851546
Target:  5'- -gGCCUCggGcACGgGCGUggCGGCCGUa -3'
miRNA:   3'- gaUGGAGuaC-UGCgUGCG--GCCGGCAa -5'
1949 5' -57.8 NC_001347.2 + 91001 0.66 0.900098
Target:  5'- gCUACCagAUGAUGCACcccgaacucggGCUGGCCc-- -3'
miRNA:   3'- -GAUGGagUACUGCGUG-----------CGGCCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 87059 0.66 0.893786
Target:  5'- -cACCUCGUccaGAC-CGCGCCGGUCc-- -3'
miRNA:   3'- gaUGGAGUA---CUGcGUGCGGCCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 85232 0.67 0.859084
Target:  5'- gCUACCUCGUacACGUugaGCCGGCCc-- -3'
miRNA:   3'- -GAUGGAGUAc-UGCGug-CGGCCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 65871 0.72 0.592128
Target:  5'- -gGCCUUcgGcACGCugGCgGGCCGa- -3'
miRNA:   3'- gaUGGAGuaC-UGCGugCGgCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 63222 0.67 0.86643
Target:  5'- -gGCCgc-UGACGCuguuuACGCCGGCCu-- -3'
miRNA:   3'- gaUGGaguACUGCG-----UGCGGCCGGcaa -5'
1949 5' -57.8 NC_001347.2 + 62749 0.69 0.76702
Target:  5'- -cGCCcCGUGACGacgaGCGgCGGCCGa- -3'
miRNA:   3'- gaUGGaGUACUGCg---UGCgGCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 62338 0.68 0.81959
Target:  5'- -gACCUaCAUGcugGCGCGCCGGCgGg- -3'
miRNA:   3'- gaUGGA-GUACug-CGUGCGGCCGgCaa -5'
1949 5' -57.8 NC_001347.2 + 41694 0.66 0.88726
Target:  5'- -----aCGUGGCGCguggAUGCCGGCCGa- -3'
miRNA:   3'- gauggaGUACUGCG----UGCGGCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 27137 0.69 0.74851
Target:  5'- -gGCCUUAUGugGCuGCGCCGuuuuGCUGUc -3'
miRNA:   3'- gaUGGAGUACugCG-UGCGGC----CGGCAa -5'
1949 5' -57.8 NC_001347.2 + 24653 0.66 0.906191
Target:  5'- -gGCCUCcUGGCGCACaucCCGGCg--- -3'
miRNA:   3'- gaUGGAGuACUGCGUGc--GGCCGgcaa -5'
1949 5' -57.8 NC_001347.2 + 18477 0.69 0.739106
Target:  5'- -gGCCUUuUGACcaCAUGCCGGCCGc- -3'
miRNA:   3'- gaUGGAGuACUGc-GUGCGGCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 16375 0.69 0.74851
Target:  5'- gCUGCUgcgucacggUCAUGACGCcgacGCGuuGGCCGc- -3'
miRNA:   3'- -GAUGG---------AGUACUGCG----UGCggCCGGCaa -5'
1949 5' -57.8 NC_001347.2 + 2610 0.73 0.562702
Target:  5'- aCUACCUgCAaGACGCccgACGCCGcGCCGa- -3'
miRNA:   3'- -GAUGGA-GUaCUGCG---UGCGGC-CGGCaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.