Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 193165 | 0.75 | 0.44158 |
Target: 5'- uCUGCCUgGgcACGCGCGUCGGCCGc- -3' miRNA: 3'- -GAUGGAgUacUGCGUGCGGCCGGCaa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 63222 | 0.67 | 0.86643 |
Target: 5'- -gGCCgc-UGACGCuguuuACGCCGGCCu-- -3' miRNA: 3'- gaUGGaguACUGCG-----UGCGGCCGGcaa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 96186 | 0.67 | 0.851546 |
Target: 5'- -gGCCUCggGcACGgGCGUggCGGCCGUa -3' miRNA: 3'- gaUGGAGuaC-UGCgUGCG--GCCGGCAa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 124881 | 0.68 | 0.827836 |
Target: 5'- -cGCCUCccGAgGCACGUCggGGCUGUg -3' miRNA: 3'- gaUGGAGuaCUgCGUGCGG--CCGGCAa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 96649 | 0.67 | 0.851546 |
Target: 5'- -aACCUgCAccGCGuCACGCUGGCCGa- -3' miRNA: 3'- gaUGGA-GUacUGC-GUGCGGCCGGCaa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 190589 | 0.67 | 0.843821 |
Target: 5'- --uCCUCGUGugGCAaGuuGGCCa-- -3' miRNA: 3'- gauGGAGUACugCGUgCggCCGGcaa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 100871 | 0.67 | 0.843821 |
Target: 5'- -aGCCgaggCGgcgcGGCGCAgCGCCGGCCa-- -3' miRNA: 3'- gaUGGa---GUa---CUGCGU-GCGGCCGGcaa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 168793 | 0.68 | 0.802625 |
Target: 5'- -cGCCaUCAUgGACGCGCGCgcgguggccaaaCGGCCGc- -3' miRNA: 3'- gaUGG-AGUA-CUGCGUGCG------------GCCGGCaa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 62338 | 0.68 | 0.81959 |
Target: 5'- -gACCUaCAUGcugGCGCGCCGGCgGg- -3' miRNA: 3'- gaUGGA-GUACug-CGUGCGGCCGgCaa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 85232 | 0.67 | 0.859084 |
Target: 5'- gCUACCUCGUacACGUugaGCCGGCCc-- -3' miRNA: 3'- -GAUGGAGUAc-UGCGug-CGGCCGGcaa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 158170 | 0.66 | 0.879837 |
Target: 5'- -cGCCaUCugGACGCGCGCUcgcugguGGCCGUg -3' miRNA: 3'- gaUGG-AGuaCUGCGUGCGG-------CCGGCAa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 207645 | 0.67 | 0.873578 |
Target: 5'- gUACCUCGgcGACGCuccAUGCCGGCg--- -3' miRNA: 3'- gAUGGAGUa-CUGCG---UGCGGCCGgcaa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 183480 | 0.66 | 0.912064 |
Target: 5'- -gGCCUCGggaGACGCGCGCa-GCCc-- -3' miRNA: 3'- gaUGGAGUa--CUGCGUGCGgcCGGcaa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 173985 | 0.66 | 0.906191 |
Target: 5'- gUGCCUgGgaACGCGCGCaCGGCgCGg- -3' miRNA: 3'- gAUGGAgUacUGCGUGCG-GCCG-GCaa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 91001 | 0.66 | 0.900098 |
Target: 5'- gCUACCagAUGAUGCACcccgaacucggGCUGGCCc-- -3' miRNA: 3'- -GAUGGagUACUGCGUG-----------CGGCCGGcaa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 24653 | 0.66 | 0.906191 |
Target: 5'- -gGCCUCcUGGCGCACaucCCGGCg--- -3' miRNA: 3'- gaUGGAGuACUGCGUGc--GGCCGgcaa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 87059 | 0.66 | 0.893786 |
Target: 5'- -cACCUCGUccaGAC-CGCGCCGGUCc-- -3' miRNA: 3'- gaUGGAGUA---CUGcGUGCGGCCGGcaa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 125296 | 0.66 | 0.886596 |
Target: 5'- -gGCgUCAgUGGCGCaaccgucgcagccGCGCCGGCCu-- -3' miRNA: 3'- gaUGgAGU-ACUGCG-------------UGCGGCCGGcaa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 103964 | 0.66 | 0.88726 |
Target: 5'- -cACUcagUCAUGACGCugGCC-GCCa-- -3' miRNA: 3'- gaUGG---AGUACUGCGugCGGcCGGcaa -5' |
|||||||
1949 | 5' | -57.8 | NC_001347.2 | + | 41694 | 0.66 | 0.88726 |
Target: 5'- -----aCGUGGCGCguggAUGCCGGCCGa- -3' miRNA: 3'- gauggaGUACUGCG----UGCGGCCGGCaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home