miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19495 3' -55.6 NC_004685.1 + 26940 0.66 0.779847
Target:  5'- cGGCGUcAUGGCGACgaGUaCGGGU-CCAa -3'
miRNA:   3'- -CCGCA-UGCUGUUGa-CAcGCCCAcGGU- -5'
19495 3' -55.6 NC_004685.1 + 14352 0.66 0.779847
Target:  5'- uGGCGguggaGCGGCUGaUGCGGGccgcugGCCGc -3'
miRNA:   3'- -CCGCaugc-UGUUGAC-ACGCCCa-----CGGU- -5'
19495 3' -55.6 NC_004685.1 + 33756 0.66 0.749935
Target:  5'- cGGCGagACGugGuGCgucGUcGCGGGUGUCGg -3'
miRNA:   3'- -CCGCa-UGCugU-UGa--CA-CGCCCACGGU- -5'
19495 3' -55.6 NC_004685.1 + 13183 0.66 0.746882
Target:  5'- aGGCGUGCagggagauGGCAcgccggcaggccggACUGUaucaGUGGGUGUCGg -3'
miRNA:   3'- -CCGCAUG--------CUGU--------------UGACA----CGCCCACGGU- -5'
19495 3' -55.6 NC_004685.1 + 20097 0.66 0.73972
Target:  5'- cGCcUACGAgGGCgc-GCGGGUGCUg -3'
miRNA:   3'- cCGcAUGCUgUUGacaCGCCCACGGu -5'
19495 3' -55.6 NC_004685.1 + 8452 0.67 0.729401
Target:  5'- cGCGUACGGCGcgaagACggGUGCGGccgcgcugGCCGa -3'
miRNA:   3'- cCGCAUGCUGU-----UGa-CACGCCca------CGGU- -5'
19495 3' -55.6 NC_004685.1 + 68298 0.67 0.729401
Target:  5'- aGGCGcgccGCGGgucCGAgUGUGCGGGU-CCGa -3'
miRNA:   3'- -CCGCa---UGCU---GUUgACACGCCCAcGGU- -5'
19495 3' -55.6 NC_004685.1 + 40385 0.67 0.726287
Target:  5'- aGCccACGGaacagcugauacccCAGCUGUG-GGGUGCCAg -3'
miRNA:   3'- cCGcaUGCU--------------GUUGACACgCCCACGGU- -5'
19495 3' -55.6 NC_004685.1 + 60106 0.67 0.702162
Target:  5'- aGGgGUAUGACGcauCUGgucauggaacuccauUGCGGGgcgcgGCCAg -3'
miRNA:   3'- -CCgCAUGCUGUu--GAC---------------ACGCCCa----CGGU- -5'
19495 3' -55.6 NC_004685.1 + 40991 0.67 0.697927
Target:  5'- cGGCGUGCGcACucCUG-GUGGcGUcGCCGa -3'
miRNA:   3'- -CCGCAUGC-UGuuGACaCGCC-CA-CGGU- -5'
19495 3' -55.6 NC_004685.1 + 14820 0.67 0.697927
Target:  5'- uGGCG-GCGGCGGCUGcGCaGcUGCCGg -3'
miRNA:   3'- -CCGCaUGCUGUUGACaCGcCcACGGU- -5'
19495 3' -55.6 NC_004685.1 + 47378 0.67 0.697927
Target:  5'- aGGUGcUGCGuAC-GCUcGUGCGGGUGUa- -3'
miRNA:   3'- -CCGC-AUGC-UGuUGA-CACGCCCACGgu -5'
19495 3' -55.6 NC_004685.1 + 13958 0.67 0.676621
Target:  5'- aGGCGUACGccaAGCcGaGCGGGUcgcGCCGu -3'
miRNA:   3'- -CCGCAUGCug-UUGaCaCGCCCA---CGGU- -5'
19495 3' -55.6 NC_004685.1 + 1756 0.67 0.676621
Target:  5'- gGGCG-AUGGCAGacgGUGCGGGccgggugagugaUGCCc -3'
miRNA:   3'- -CCGCaUGCUGUUga-CACGCCC------------ACGGu -5'
19495 3' -55.6 NC_004685.1 + 5685 0.68 0.663754
Target:  5'- aGGUGcucggcCGGCAacGCUGgcugaccgagacGCGGGUGCCAg -3'
miRNA:   3'- -CCGCau----GCUGU--UGACa-----------CGCCCACGGU- -5'
19495 3' -55.6 NC_004685.1 + 21583 0.68 0.654076
Target:  5'- uGCGUagcucggGCGACGGCUGggucgGCacguucGGUGCCAu -3'
miRNA:   3'- cCGCA-------UGCUGUUGACa----CGc-----CCACGGU- -5'
19495 3' -55.6 NC_004685.1 + 31941 0.68 0.644382
Target:  5'- gGGCGUGuuCGAUGACg--GCGGuGUGCUg -3'
miRNA:   3'- -CCGCAU--GCUGUUGacaCGCC-CACGGu -5'
19495 3' -55.6 NC_004685.1 + 14727 0.68 0.644382
Target:  5'- cGGUGacCGAgGugUcgGUGUGGGUGCCGc -3'
miRNA:   3'- -CCGCauGCUgUugA--CACGCCCACGGU- -5'
19495 3' -55.6 NC_004685.1 + 54022 0.69 0.612045
Target:  5'- uGGaUGUGCcauGCAGgUGUGCGGGgaUGCCGc -3'
miRNA:   3'- -CC-GCAUGc--UGUUgACACGCCC--ACGGU- -5'
19495 3' -55.6 NC_004685.1 + 7775 0.69 0.612045
Target:  5'- uGGCGUcggucggugcGCGACGGcCUGUGgcacuCGGG-GCCGg -3'
miRNA:   3'- -CCGCA----------UGCUGUU-GACAC-----GCCCaCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.