miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19498 5' -57.6 NC_004685.1 + 68748 0.66 0.653904
Target:  5'- cGCAUC-CGCccGCAGGACuGCggCCUGu -3'
miRNA:   3'- -CGUAGcGCGu-CGUCCUGcCGa-GGAUg -5'
19498 5' -57.6 NC_004685.1 + 18106 0.66 0.653904
Target:  5'- ---aCGCGCAGgAGGACgaguGGCgcgaggUCUACa -3'
miRNA:   3'- cguaGCGCGUCgUCCUG----CCGa-----GGAUG- -5'
19498 5' -57.6 NC_004685.1 + 38298 0.66 0.643171
Target:  5'- gGCAUCGU-CGGCgAGGACGGUgaaggcgcgggCCUGg -3'
miRNA:   3'- -CGUAGCGcGUCG-UCCUGCCGa----------GGAUg -5'
19498 5' -57.6 NC_004685.1 + 15021 0.66 0.643171
Target:  5'- uGCGgagGUGCugacGCAGGACGGCaCgCUGCu -3'
miRNA:   3'- -CGUag-CGCGu---CGUCCUGCCGaG-GAUG- -5'
19498 5' -57.6 NC_004685.1 + 47599 0.66 0.632428
Target:  5'- uGCGUU-CGguGCGGauGACGGCUCCc-- -3'
miRNA:   3'- -CGUAGcGCguCGUC--CUGCCGAGGaug -5'
19498 5' -57.6 NC_004685.1 + 23577 0.66 0.632428
Target:  5'- cGUAUCGC-CAGCaAGGgucGCGGCcCCcGCg -3'
miRNA:   3'- -CGUAGCGcGUCG-UCC---UGCCGaGGaUG- -5'
19498 5' -57.6 NC_004685.1 + 9855 0.66 0.632428
Target:  5'- cGCGUCgGUGCAGCcgucacGGGcCGGCacaCUGCu -3'
miRNA:   3'- -CGUAG-CGCGUCG------UCCuGCCGag-GAUG- -5'
19498 5' -57.6 NC_004685.1 + 58087 0.66 0.632428
Target:  5'- gGCAUgGUGCGGCcuGcGCGGCUCgCcGCg -3'
miRNA:   3'- -CGUAgCGCGUCGucC-UGCCGAG-GaUG- -5'
19498 5' -57.6 NC_004685.1 + 48298 0.66 0.621684
Target:  5'- cGCGUCGcCGUAgaaguuGCGGGcACGGgUCCaGCu -3'
miRNA:   3'- -CGUAGC-GCGU------CGUCC-UGCCgAGGaUG- -5'
19498 5' -57.6 NC_004685.1 + 43908 0.67 0.600232
Target:  5'- gGCGacaCGUGUGGCuguGGcugaACGGCUCCUAUc -3'
miRNA:   3'- -CGUa--GCGCGUCGu--CC----UGCCGAGGAUG- -5'
19498 5' -57.6 NC_004685.1 + 57164 0.67 0.600232
Target:  5'- aGCAcUCcagGCGCAGCGuGcacaGCGGCUCCUcGCg -3'
miRNA:   3'- -CGU-AG---CGCGUCGUcC----UGCCGAGGA-UG- -5'
19498 5' -57.6 NC_004685.1 + 50056 0.67 0.600232
Target:  5'- aGCcUUGCGCAGCuccuCGGuCUUCUGCg -3'
miRNA:   3'- -CGuAGCGCGUCGuccuGCC-GAGGAUG- -5'
19498 5' -57.6 NC_004685.1 + 14827 0.67 0.600232
Target:  5'- gGCGgcuGCGCAGCugccGGAgGGUUCCagGCu -3'
miRNA:   3'- -CGUag-CGCGUCGu---CCUgCCGAGGa-UG- -5'
19498 5' -57.6 NC_004685.1 + 44245 0.67 0.589541
Target:  5'- aCAUCggGCGCAGCuGGGugGGCcacgCCa-- -3'
miRNA:   3'- cGUAG--CGCGUCG-UCCugCCGa---GGaug -5'
19498 5' -57.6 NC_004685.1 + 59312 0.67 0.589541
Target:  5'- gGCGaCGCGCugcGCAcGGuCGGUcugcUCCUGCg -3'
miRNA:   3'- -CGUaGCGCGu--CGU-CCuGCCG----AGGAUG- -5'
19498 5' -57.6 NC_004685.1 + 7310 0.67 0.578884
Target:  5'- gGCGUCgaGCGguGCAGGACcugcaaccguuuGGCcCCgGCg -3'
miRNA:   3'- -CGUAG--CGCguCGUCCUG------------CCGaGGaUG- -5'
19498 5' -57.6 NC_004685.1 + 20269 0.67 0.565094
Target:  5'- aCGUCGCGguGaCGGucguugagggugacGACGGCgugcCCUACg -3'
miRNA:   3'- cGUAGCGCguC-GUC--------------CUGCCGa---GGAUG- -5'
19498 5' -57.6 NC_004685.1 + 13670 0.67 0.557703
Target:  5'- aCAUCGCcgggucguacugGCcGCGGGuGCGGCgcaCCUGCa -3'
miRNA:   3'- cGUAGCG------------CGuCGUCC-UGCCGa--GGAUG- -5'
19498 5' -57.6 NC_004685.1 + 32993 0.67 0.557703
Target:  5'- aGCAgaaggGCGCAacGCAGGACGGCgug-ACg -3'
miRNA:   3'- -CGUag---CGCGU--CGUCCUGCCGaggaUG- -5'
19498 5' -57.6 NC_004685.1 + 20121 0.67 0.557703
Target:  5'- gGCGaUGCGCGGCgAGGAuCGGUUgCUGg -3'
miRNA:   3'- -CGUaGCGCGUCG-UCCU-GCCGAgGAUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.