miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1950 3' -56.4 NC_001347.2 + 135204 0.66 0.948344
Target:  5'- gGGUCcgagGCGCcGaCCCCGGcUGggCGGCc -3'
miRNA:   3'- -CCAGa---CGCGaC-GGGGCU-AUuaGCCGa -5'
1950 3' -56.4 NC_001347.2 + 33407 0.66 0.939627
Target:  5'- uGUgUGCGUUGCcgaccCCCGGUGAgCGGUc -3'
miRNA:   3'- cCAgACGCGACG-----GGGCUAUUaGCCGa -5'
1950 3' -56.4 NC_001347.2 + 74992 0.66 0.939627
Target:  5'- cGGUCUGCgaGCUGaUCUGAcAGUUGGCc -3'
miRNA:   3'- -CCAGACG--CGACgGGGCUaUUAGCCGa -5'
1950 3' -56.4 NC_001347.2 + 182215 0.66 0.939627
Target:  5'- cGGgCUGCGUcGCCuUCGGUGacGUCGGUg -3'
miRNA:   3'- -CCaGACGCGaCGG-GGCUAU--UAGCCGa -5'
1950 3' -56.4 NC_001347.2 + 133784 0.67 0.919502
Target:  5'- aGGuUCUG-GCUGCacccgCCCGAUcccucGUCGGCUu -3'
miRNA:   3'- -CC-AGACgCGACG-----GGGCUAu----UAGCCGA- -5'
1950 3' -56.4 NC_001347.2 + 112525 0.67 0.908089
Target:  5'- uGUCcGcCGCUGCCCCcGUGA-CGGUg -3'
miRNA:   3'- cCAGaC-GCGACGGGGcUAUUaGCCGa -5'
1950 3' -56.4 NC_001347.2 + 139810 0.68 0.898318
Target:  5'- uGGUUUGCGaguuggccuucaguuUUGCCUCGGUAuuuuucgauUCGGCUu -3'
miRNA:   3'- -CCAGACGC---------------GACGGGGCUAUu--------AGCCGA- -5'
1950 3' -56.4 NC_001347.2 + 94115 0.68 0.895787
Target:  5'- cGUCUGCGC-GCCugagagCCGAUuAUCGGg- -3'
miRNA:   3'- cCAGACGCGaCGG------GGCUAuUAGCCga -5'
1950 3' -56.4 NC_001347.2 + 37514 0.68 0.861302
Target:  5'- aGUCUGCGUUGUUuuauaUCGucgGGUCGGCUg -3'
miRNA:   3'- cCAGACGCGACGG-----GGCua-UUAGCCGA- -5'
1950 3' -56.4 NC_001347.2 + 201462 0.69 0.838232
Target:  5'- uGGUCUGgcccaaagacCGCUGCCUCGuu-AUcCGGCg -3'
miRNA:   3'- -CCAGAC----------GCGACGGGGCuauUA-GCCGa -5'
1950 3' -56.4 NC_001347.2 + 22542 0.71 0.760269
Target:  5'- cGGUCUGuCGuUUGCCCUGGUGAU-GGUc -3'
miRNA:   3'- -CCAGAC-GC-GACGGGGCUAUUAgCCGa -5'
1950 3' -56.4 NC_001347.2 + 201539 0.71 0.726323
Target:  5'- cGUCUGgccagcuaccucUGCUGCCCCGAgccgcugcguuucGUCGGCa -3'
miRNA:   3'- cCAGAC------------GCGACGGGGCUau-----------UAGCCGa -5'
1950 3' -56.4 NC_001347.2 + 229708 0.73 0.624036
Target:  5'- cGGUgUGCGCgGCCUCGGggugugCGGCUu -3'
miRNA:   3'- -CCAgACGCGaCGGGGCUauua--GCCGA- -5'
1950 3' -56.4 NC_001347.2 + 229 0.73 0.624036
Target:  5'- cGGUgUGCGCgGCCUCGGggugugCGGCUu -3'
miRNA:   3'- -CCAgACGCGaCGGGGCUauua--GCCGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.