miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
1950 5' -53.6 NC_001347.2 + 2353 0.66 0.98901
Target:  5'- cGCGGGCGUgcuggGCGCgCUGGcGCUGGg-- -3'
miRNA:   3'- -CGUCUGCGa----UGUG-GACUcUGACCaga -5'
1950 5' -53.6 NC_001347.2 + 168981 0.66 0.98901
Target:  5'- cGCAGccgggcGCGCUGCucauCCgcaugGAGACgGGUUg -3'
miRNA:   3'- -CGUC------UGCGAUGu---GGa----CUCUGaCCAGa -5'
1950 5' -53.6 NC_001347.2 + 75083 0.66 0.987574
Target:  5'- -gAGACGCUGCA--UGAG-CUGGUa- -3'
miRNA:   3'- cgUCUGCGAUGUggACUCuGACCAga -5'
1950 5' -53.6 NC_001347.2 + 137408 0.66 0.987574
Target:  5'- aGCGGAUaugGCUACACguaaUGGGugUGG-CUu -3'
miRNA:   3'- -CGUCUG---CGAUGUGg---ACUCugACCaGA- -5'
1950 5' -53.6 NC_001347.2 + 110698 0.66 0.985998
Target:  5'- cGCuGACGCUgguagACGCCcugGAGcaGCUGGcCUg -3'
miRNA:   3'- -CGuCUGCGA-----UGUGGa--CUC--UGACCaGA- -5'
1950 5' -53.6 NC_001347.2 + 48244 0.66 0.984273
Target:  5'- uGCuAGGCGCaUACucgGCCUGGGGCgcgGGcUCg -3'
miRNA:   3'- -CG-UCUGCG-AUG---UGGACUCUGa--CC-AGa -5'
1950 5' -53.6 NC_001347.2 + 194036 0.66 0.980344
Target:  5'- uCAGGgGCUucguGCGCgUGGGGCUGGcgCUg -3'
miRNA:   3'- cGUCUgCGA----UGUGgACUCUGACCa-GA- -5'
1950 5' -53.6 NC_001347.2 + 66068 0.66 0.980344
Target:  5'- gGCAGACGCUGaguaACCaugugauccgGAGGCUG-UCa -3'
miRNA:   3'- -CGUCUGCGAUg---UGGa---------CUCUGACcAGa -5'
1950 5' -53.6 NC_001347.2 + 199273 0.67 0.979034
Target:  5'- cCAGGCGCUACGuuguuuaagacggggUCgacGAGGCUGGUg- -3'
miRNA:   3'- cGUCUGCGAUGU---------------GGa--CUCUGACCAga -5'
1950 5' -53.6 NC_001347.2 + 62346 0.67 0.973141
Target:  5'- uGCuGGCGC---GCCggcGGGACUGGUCc -3'
miRNA:   3'- -CGuCUGCGaugUGGa--CUCUGACCAGa -5'
1950 5' -53.6 NC_001347.2 + 31394 0.68 0.958661
Target:  5'- gGCGGugGCUGCgccuccucgucgGCCUGGGcugcuguuggguaacGCUGGcUCa -3'
miRNA:   3'- -CGUCugCGAUG------------UGGACUC---------------UGACC-AGa -5'
1950 5' -53.6 NC_001347.2 + 194642 0.68 0.953356
Target:  5'- cCGGACGCaaacacgGCGCCcGAGAUcugGGUCUc -3'
miRNA:   3'- cGUCUGCGa------UGUGGaCUCUGa--CCAGA- -5'
1950 5' -53.6 NC_001347.2 + 108681 0.69 0.94501
Target:  5'- gGCAGGCGCgucuCACgguCUcGGGACUGGcCUg -3'
miRNA:   3'- -CGUCUGCGau--GUG---GA-CUCUGACCaGA- -5'
1950 5' -53.6 NC_001347.2 + 2635 0.69 0.94501
Target:  5'- cGCcGACGCUcaaGCuCUGGGACUGGaCUu -3'
miRNA:   3'- -CGuCUGCGAug-UG-GACUCUGACCaGA- -5'
1950 5' -53.6 NC_001347.2 + 79750 0.69 0.920083
Target:  5'- aGCAGACGCggcAUACCUGccugcaGCUGGUa- -3'
miRNA:   3'- -CGUCUGCGa--UGUGGACuc----UGACCAga -5'
1950 5' -53.6 NC_001347.2 + 152338 0.71 0.875432
Target:  5'- --uGAUGCUGCugagaCUGAGACUGGUg- -3'
miRNA:   3'- cguCUGCGAUGug---GACUCUGACCAga -5'
1950 5' -53.6 NC_001347.2 + 105601 0.71 0.875432
Target:  5'- uGCuGACGCUGgGCCagUGGGAgCUGGUgCUg -3'
miRNA:   3'- -CGuCUGCGAUgUGG--ACUCU-GACCA-GA- -5'
1950 5' -53.6 NC_001347.2 + 79330 0.72 0.828824
Target:  5'- aGCuGugGCUGCACacgGAGcacgggcuGCUGGUCUc -3'
miRNA:   3'- -CGuCugCGAUGUGga-CUC--------UGACCAGA- -5'
1950 5' -53.6 NC_001347.2 + 199524 0.72 0.811806
Target:  5'- aGCGGACgGCU-CACCUGgcgccacgGGACUGGUa- -3'
miRNA:   3'- -CGUCUG-CGAuGUGGAC--------UCUGACCAga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.