miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19501 3' -50.4 NC_004685.1 + 51931 0.66 0.958619
Target:  5'- gCCCAUcuugCGGAacuuggUGUUCAgGCCGGGGACg- -3'
miRNA:   3'- -GGGUA----GCCU------AUAGGU-CGGUUCUUGaa -5'
19501 3' -50.4 NC_004685.1 + 31621 0.66 0.954435
Target:  5'- --gGUUGGcgAUCCAGUCGAGGAUc- -3'
miRNA:   3'- gggUAGCCuaUAGGUCGGUUCUUGaa -5'
19501 3' -50.4 NC_004685.1 + 24988 0.66 0.945233
Target:  5'- gCgGcCGGGUGUCCGGCCcgGGGGGCc- -3'
miRNA:   3'- gGgUaGCCUAUAGGUCGG--UUCUUGaa -5'
19501 3' -50.4 NC_004685.1 + 24861 0.66 0.941743
Target:  5'- gCCCAUCGGGaaguucuuggcuggaUAUCCGaugggcuGCCA-GAACa- -3'
miRNA:   3'- -GGGUAGCCU---------------AUAGGU-------CGGUuCUUGaa -5'
19501 3' -50.4 NC_004685.1 + 1250 0.66 0.940205
Target:  5'- gCCCgauGUCGGA--UCCGGCUAcgcAGGGCa- -3'
miRNA:   3'- -GGG---UAGCCUauAGGUCGGU---UCUUGaa -5'
19501 3' -50.4 NC_004685.1 + 50839 0.66 0.940205
Target:  5'- aCCC-UUGGAauucUCCagGGCCAGGAACg- -3'
miRNA:   3'- -GGGuAGCCUau--AGG--UCGGUUCUUGaa -5'
19501 3' -50.4 NC_004685.1 + 10846 0.67 0.917196
Target:  5'- gCUCGUCGGAUugucgaguugAUCCGGgCGAGAucCUUg -3'
miRNA:   3'- -GGGUAGCCUA----------UAGGUCgGUUCUu-GAA- -5'
19501 3' -50.4 NC_004685.1 + 9600 0.67 0.910718
Target:  5'- cCCCAUCGG---UUCGGgCGAGGGCa- -3'
miRNA:   3'- -GGGUAGCCuauAGGUCgGUUCUUGaa -5'
19501 3' -50.4 NC_004685.1 + 32681 0.68 0.889568
Target:  5'- aCCG-CGGGg--CCAGCCAGG-ACUUu -3'
miRNA:   3'- gGGUaGCCUauaGGUCGGUUCuUGAA- -5'
19501 3' -50.4 NC_004685.1 + 7168 0.69 0.857542
Target:  5'- gCCAUCGcGGUGUCCgAGCCGucGGGAg-- -3'
miRNA:   3'- gGGUAGC-CUAUAGG-UCGGU--UCUUgaa -5'
19501 3' -50.4 NC_004685.1 + 40405 0.69 0.84001
Target:  5'- cCCCAgcugUGGGgugCCAGCgAAGAACg- -3'
miRNA:   3'- -GGGUa---GCCUauaGGUCGgUUCUUGaa -5'
19501 3' -50.4 NC_004685.1 + 49949 0.7 0.792335
Target:  5'- uCCCAguacUCGGGgccGUCCAGCCGccacgAGAugUg -3'
miRNA:   3'- -GGGU----AGCCUa--UAGGUCGGU-----UCUugAa -5'
19501 3' -50.4 NC_004685.1 + 26214 0.7 0.782227
Target:  5'- aUCCA-CGcGAUGUCCAGCCA-GAugUc -3'
miRNA:   3'- -GGGUaGC-CUAUAGGUCGGUuCUugAa -5'
19501 3' -50.4 NC_004685.1 + 25979 0.72 0.696485
Target:  5'- aCCAUCGGucuUCCAGCCGggcAGggUg- -3'
miRNA:   3'- gGGUAGCCuauAGGUCGGU---UCuuGaa -5'
19501 3' -50.4 NC_004685.1 + 14863 0.74 0.572832
Target:  5'- aUCAUCGGAggAUCUGGCCGAGAAg-- -3'
miRNA:   3'- gGGUAGCCUa-UAGGUCGGUUCUUgaa -5'
19501 3' -50.4 NC_004685.1 + 29158 0.79 0.318078
Target:  5'- gCgGUCGGAUagccgaacaGUCCGGCCAGGAACg- -3'
miRNA:   3'- gGgUAGCCUA---------UAGGUCGGUUCUUGaa -5'
19501 3' -50.4 NC_004685.1 + 44813 1.07 0.005032
Target:  5'- gCCCAUCGGAUAUCCAGCCAAGAACUUc -3'
miRNA:   3'- -GGGUAGCCUAUAGGUCGGUUCUUGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.