miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19501 5' -56.7 NC_004685.1 + 13676 0.66 0.722933
Target:  5'- cCGGGUCguacUgGCCGCGGGUG-CGGCg -3'
miRNA:   3'- cGUUCAGgu--AgCGGCGCCCGUaGCUG- -5'
19501 5' -56.7 NC_004685.1 + 29360 0.66 0.722933
Target:  5'- cCAAGUCgaugaAUCgGUCGaugaaGGGCGUCGGCc -3'
miRNA:   3'- cGUUCAGg----UAG-CGGCg----CCCGUAGCUG- -5'
19501 5' -56.7 NC_004685.1 + 64871 0.66 0.722933
Target:  5'- aGguAGUCguUCaGgCGaucaaGGGCAUCGGCg -3'
miRNA:   3'- -CguUCAGguAG-CgGCg----CCCGUAGCUG- -5'
19501 5' -56.7 NC_004685.1 + 48322 0.66 0.722933
Target:  5'- aCGGGUCCAgcuGCCGUcGGCcugaAUCGGCc -3'
miRNA:   3'- cGUUCAGGUag-CGGCGcCCG----UAGCUG- -5'
19501 5' -56.7 NC_004685.1 + 62414 0.66 0.712527
Target:  5'- aCAGGUgCCAguggUCGCCGUcgGGGCAcCGGu -3'
miRNA:   3'- cGUUCA-GGU----AGCGGCG--CCCGUaGCUg -5'
19501 5' -56.7 NC_004685.1 + 47587 0.66 0.712527
Target:  5'- aCGGG-CCGUCaGCaGCGcGGCGUCGAg -3'
miRNA:   3'- cGUUCaGGUAG-CGgCGC-CCGUAGCUg -5'
19501 5' -56.7 NC_004685.1 + 38952 0.66 0.712527
Target:  5'- cGUggGUaggUAUCGCgGUGGaCAUCGGCg -3'
miRNA:   3'- -CGuuCAg--GUAGCGgCGCCcGUAGCUG- -5'
19501 5' -56.7 NC_004685.1 + 64733 0.66 0.712527
Target:  5'- gGCAaagucGGUgacCCGUCGCCGaacacCGGGaAUCGGCu -3'
miRNA:   3'- -CGU-----UCA---GGUAGCGGC-----GCCCgUAGCUG- -5'
19501 5' -56.7 NC_004685.1 + 23763 0.66 0.712527
Target:  5'- gGCAGGUCCAgcUUGCC--GGGCAgcgcCGAg -3'
miRNA:   3'- -CGUUCAGGU--AGCGGcgCCCGUa---GCUg -5'
19501 5' -56.7 NC_004685.1 + 18003 0.66 0.712527
Target:  5'- cCAGGUgCugacCuCCGCGGGCAcCGACg -3'
miRNA:   3'- cGUUCAgGua--GcGGCGCCCGUaGCUG- -5'
19501 5' -56.7 NC_004685.1 + 62725 0.66 0.702046
Target:  5'- ---cGUCCGagaUgGCUGCGGGC-UUGACc -3'
miRNA:   3'- cguuCAGGU---AgCGGCGCCCGuAGCUG- -5'
19501 5' -56.7 NC_004685.1 + 45612 0.66 0.702046
Target:  5'- uGCu-GUUCGUCGCgauCGCGGcGC-UCGGCu -3'
miRNA:   3'- -CGuuCAGGUAGCG---GCGCC-CGuAGCUG- -5'
19501 5' -56.7 NC_004685.1 + 52780 0.66 0.702046
Target:  5'- gGC-GGUCUucUUGCgGCGGGCcgUGGCc -3'
miRNA:   3'- -CGuUCAGGu-AGCGgCGCCCGuaGCUG- -5'
19501 5' -56.7 NC_004685.1 + 12424 0.66 0.685147
Target:  5'- uGCGGG-CCAUCGCCgagaagGCGGcagcccugcgccccuGgGUCGACa -3'
miRNA:   3'- -CGUUCaGGUAGCGG------CGCC---------------CgUAGCUG- -5'
19501 5' -56.7 NC_004685.1 + 61233 0.66 0.680901
Target:  5'- cGCAcccGUCUucgCGCCGUacGCGUCGACg -3'
miRNA:   3'- -CGUu--CAGGua-GCGGCGccCGUAGCUG- -5'
19501 5' -56.7 NC_004685.1 + 2851 0.66 0.680901
Target:  5'- cGCGGGUCCAcUGCU-UGGGCuugCGGCc -3'
miRNA:   3'- -CGUUCAGGUaGCGGcGCCCGua-GCUG- -5'
19501 5' -56.7 NC_004685.1 + 38008 0.66 0.680901
Target:  5'- cGCAGGgcg--CGaCCGCGGGCAcauuccacuUCGAUg -3'
miRNA:   3'- -CGUUCagguaGC-GGCGCCCGU---------AGCUG- -5'
19501 5' -56.7 NC_004685.1 + 36879 0.66 0.679838
Target:  5'- gGCAAcaUCGUCggccgcgGCCGCGGGCAcgUCGGg -3'
miRNA:   3'- -CGUUcaGGUAG-------CGGCGCCCGU--AGCUg -5'
19501 5' -56.7 NC_004685.1 + 8187 0.67 0.670257
Target:  5'- ---cGUCgCGaCGCCGcCGGGCgGUCGGCc -3'
miRNA:   3'- cguuCAG-GUaGCGGC-GCCCG-UAGCUG- -5'
19501 5' -56.7 NC_004685.1 + 3633 0.67 0.670257
Target:  5'- ---cGcCCGcUUGCCuacGUGGGCAUCGGCg -3'
miRNA:   3'- cguuCaGGU-AGCGG---CGCCCGUAGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.