miRNA display CGI


Results 21 - 40 of 163 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19505 3' -60.1 NC_004685.1 + 67250 0.66 0.53768
Target:  5'- cGCCGUCGAACAG-GCcaccGGCgGC-CGCGu -3'
miRNA:   3'- -CGGCGGCUUGUCgCGc---UCG-CGuGCGU- -5'
19505 3' -60.1 NC_004685.1 + 10994 0.66 0.527533
Target:  5'- uGCCGCCGGAguucCuGCGCaAGgGC-CGCu -3'
miRNA:   3'- -CGGCGGCUU----GuCGCGcUCgCGuGCGu -5'
19505 3' -60.1 NC_004685.1 + 43133 0.66 0.527533
Target:  5'- cUCGCC---CAGCGCGAuccugGCGaCGCGCAc -3'
miRNA:   3'- cGGCGGcuuGUCGCGCU-----CGC-GUGCGU- -5'
19505 3' -60.1 NC_004685.1 + 24895 0.66 0.527533
Target:  5'- gGCUGCCaGAACAGCuugucuucGCaGGCcCGCGCGg -3'
miRNA:   3'- -CGGCGG-CUUGUCG--------CGcUCGcGUGCGU- -5'
19505 3' -60.1 NC_004685.1 + 18230 0.66 0.527533
Target:  5'- aGCUGUCGu-CGGC-UGGGCGCACGg- -3'
miRNA:   3'- -CGGCGGCuuGUCGcGCUCGCGUGCgu -5'
19505 3' -60.1 NC_004685.1 + 38249 0.66 0.527533
Target:  5'- cGCCGgugucgguaCCGGGCGGCaaacCGuAGgGCACGCGg -3'
miRNA:   3'- -CGGC---------GGCUUGUCGc---GC-UCgCGUGCGU- -5'
19505 3' -60.1 NC_004685.1 + 19207 0.66 0.527533
Target:  5'- -gCGCCGAcCAGCuCGAcGCGCACugGCu -3'
miRNA:   3'- cgGCGGCUuGUCGcGCU-CGCGUG--CGu -5'
19505 3' -60.1 NC_004685.1 + 67842 0.66 0.518463
Target:  5'- aGCCGagcuggucaccgucCCGAggucgacaugggaucGCGGCGCGccGGCGuCGCGCu -3'
miRNA:   3'- -CGGC--------------GGCU---------------UGUCGCGC--UCGC-GUGCGu -5'
19505 3' -60.1 NC_004685.1 + 30188 0.66 0.517459
Target:  5'- cGCUG-CGAcCAGCGCGcucgucggccugGGCGC-CGCGg -3'
miRNA:   3'- -CGGCgGCUuGUCGCGC------------UCGCGuGCGU- -5'
19505 3' -60.1 NC_004685.1 + 7835 0.66 0.517459
Target:  5'- aUCGCUGcGCAGCGCGAG-GUGCcCAa -3'
miRNA:   3'- cGGCGGCuUGUCGCGCUCgCGUGcGU- -5'
19505 3' -60.1 NC_004685.1 + 38519 0.66 0.517459
Target:  5'- cGCCcaggaCCGGcGCGGCgGCGAGCGU-CGCGa -3'
miRNA:   3'- -CGGc----GGCU-UGUCG-CGCUCGCGuGCGU- -5'
19505 3' -60.1 NC_004685.1 + 55642 0.66 0.517459
Target:  5'- gGgCGCCGAACAGgaUGCGGcuGCcGUugGCGa -3'
miRNA:   3'- -CgGCGGCUUGUC--GCGCU--CG-CGugCGU- -5'
19505 3' -60.1 NC_004685.1 + 24570 0.66 0.517459
Target:  5'- uGCCcugaCCGAggACGGCGgaccCGAGCGgGCGCc -3'
miRNA:   3'- -CGGc---GGCU--UGUCGC----GCUCGCgUGCGu -5'
19505 3' -60.1 NC_004685.1 + 18857 0.66 0.517459
Target:  5'- aCCGCCGAGCAGaucagaaaGCuGAcCGCGCGg- -3'
miRNA:   3'- cGGCGGCUUGUCg-------CG-CUcGCGUGCgu -5'
19505 3' -60.1 NC_004685.1 + 34449 0.66 0.507463
Target:  5'- uGUCGUCGAugACAGCGC---CGCACGUc -3'
miRNA:   3'- -CGGCGGCU--UGUCGCGcucGCGUGCGu -5'
19505 3' -60.1 NC_004685.1 + 35022 0.66 0.507463
Target:  5'- cUCGCCGAACu-CGCcGGCGCGCuGCc -3'
miRNA:   3'- cGGCGGCUUGucGCGcUCGCGUG-CGu -5'
19505 3' -60.1 NC_004685.1 + 48791 0.66 0.507463
Target:  5'- gGCCGCgCGGGCauagaccuccaGGCGaucaGcGGCGCugGCGu -3'
miRNA:   3'- -CGGCG-GCUUG-----------UCGCg---C-UCGCGugCGU- -5'
19505 3' -60.1 NC_004685.1 + 63016 0.66 0.501504
Target:  5'- gGCC-CCGGccuugcGCAGCGCGucaccgauggcaccGCGCAUGUAc -3'
miRNA:   3'- -CGGcGGCU------UGUCGCGCu-------------CGCGUGCGU- -5'
19505 3' -60.1 NC_004685.1 + 2872 0.66 0.497549
Target:  5'- uGCgGCCGGu--GCGCacGGCGCugGCc -3'
miRNA:   3'- -CGgCGGCUuguCGCGc-UCGCGugCGu -5'
19505 3' -60.1 NC_004685.1 + 28447 0.66 0.497549
Target:  5'- --aGCCGAACGcGCGCGccaGGCGUACa-- -3'
miRNA:   3'- cggCGGCUUGU-CGCGC---UCGCGUGcgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.