miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19509 5' -56.4 NC_004685.1 + 47868 0.66 0.705818
Target:  5'- cUGCUGCUCGCAG-C-CGG-GCCaACu -3'
miRNA:   3'- cAUGACGAGCGUCaGcGUCaCGGcUG- -5'
19509 5' -56.4 NC_004685.1 + 63194 0.66 0.684394
Target:  5'- cGUGCUgcaGCUCGUAGccuUCGaGGUcGCCGAUg -3'
miRNA:   3'- -CAUGA---CGAGCGUC---AGCgUCA-CGGCUG- -5'
19509 5' -56.4 NC_004685.1 + 52404 0.66 0.684394
Target:  5'- -cACUGCUCGaAGcCGUg--GCCGACg -3'
miRNA:   3'- caUGACGAGCgUCaGCGucaCGGCUG- -5'
19509 5' -56.4 NC_004685.1 + 29029 0.66 0.683317
Target:  5'- gGUGCggucGC-CGC-GUCGCAGUccaucgcgcuccuGCCGACc -3'
miRNA:   3'- -CAUGa---CGaGCGuCAGCGUCA-------------CGGCUG- -5'
19509 5' -56.4 NC_004685.1 + 49317 0.66 0.662775
Target:  5'- gGUACUGCUcggcCGCGGccaGCAGcuCCGACg -3'
miRNA:   3'- -CAUGACGA----GCGUCag-CGUCacGGCUG- -5'
19509 5' -56.4 NC_004685.1 + 16235 0.67 0.651918
Target:  5'- -gACUGCg-GC-GagGUAGUGCCGACc -3'
miRNA:   3'- caUGACGagCGuCagCGUCACGGCUG- -5'
19509 5' -56.4 NC_004685.1 + 55365 0.67 0.651918
Target:  5'- -cACUGCUCGaugucgucgaGGUCGCcGGUGUccuCGGCg -3'
miRNA:   3'- caUGACGAGCg---------UCAGCG-UCACG---GCUG- -5'
19509 5' -56.4 NC_004685.1 + 51046 0.67 0.651918
Target:  5'- -aACUGCUCGU---CGUAGccGCCGACc -3'
miRNA:   3'- caUGACGAGCGucaGCGUCa-CGGCUG- -5'
19509 5' -56.4 NC_004685.1 + 50865 0.67 0.642132
Target:  5'- uGUACaGC-CGCAGccgucggcgguugcgCGCGGUGCCGcGCg -3'
miRNA:   3'- -CAUGaCGaGCGUCa--------------GCGUCACGGC-UG- -5'
19509 5' -56.4 NC_004685.1 + 20750 0.67 0.619281
Target:  5'- -gGCUGC-CGCuAGagGCGGaaGCCGACg -3'
miRNA:   3'- caUGACGaGCG-UCagCGUCa-CGGCUG- -5'
19509 5' -56.4 NC_004685.1 + 44157 0.67 0.608411
Target:  5'- cGUGCUGCgcaaCAGacCGCAGgugaagGCCGACg -3'
miRNA:   3'- -CAUGACGagc-GUCa-GCGUCa-----CGGCUG- -5'
19509 5' -56.4 NC_004685.1 + 17024 0.67 0.608411
Target:  5'- cUGCUGCUcacCGUGGU-GCAGaagaugGCCGACa -3'
miRNA:   3'- cAUGACGA---GCGUCAgCGUCa-----CGGCUG- -5'
19509 5' -56.4 NC_004685.1 + 52582 0.67 0.597562
Target:  5'- uGUACaGgUCGCAGUCGauguggacCAG-GCCGAUg -3'
miRNA:   3'- -CAUGaCgAGCGUCAGC--------GUCaCGGCUG- -5'
19509 5' -56.4 NC_004685.1 + 55090 0.68 0.543908
Target:  5'- --cCUuCUCGCcGUCGuCGGUGUCGACg -3'
miRNA:   3'- cauGAcGAGCGuCAGC-GUCACGGCUG- -5'
19509 5' -56.4 NC_004685.1 + 45610 0.68 0.53335
Target:  5'- gGUGCUGUucgUCGCGaUCGCGGcGCuCGGCu -3'
miRNA:   3'- -CAUGACG---AGCGUcAGCGUCaCG-GCUG- -5'
19509 5' -56.4 NC_004685.1 + 35900 0.68 0.53335
Target:  5'- --cCUGaaggUGCGGUCGCuGUcGCCGACa -3'
miRNA:   3'- cauGACga--GCGUCAGCGuCA-CGGCUG- -5'
19509 5' -56.4 NC_004685.1 + 2394 0.69 0.522866
Target:  5'- -aGCUugGCggCGCGGucguucUCGCAGUGCCaGACg -3'
miRNA:   3'- caUGA--CGa-GCGUC------AGCGUCACGG-CUG- -5'
19509 5' -56.4 NC_004685.1 + 40854 0.69 0.502145
Target:  5'- ----gGUUCuGCAG-CGCGGUGCUGGCg -3'
miRNA:   3'- caugaCGAG-CGUCaGCGUCACGGCUG- -5'
19509 5' -56.4 NC_004685.1 + 42514 0.69 0.49192
Target:  5'- gGUGCUGa-CGUguUCGCGGUGCUGGCc -3'
miRNA:   3'- -CAUGACgaGCGucAGCGUCACGGCUG- -5'
19509 5' -56.4 NC_004685.1 + 17097 0.69 0.49192
Target:  5'- -aGCUGgUCG-AGUCGCAGcgguucggcGCCGACg -3'
miRNA:   3'- caUGACgAGCgUCAGCGUCa--------CGGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.