miRNA display CGI


Results 1 - 20 of 64 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19512 3' -54.2 NC_004685.1 + 30305 0.66 0.856859
Target:  5'- uGGCcGCGccgCCCGG-UGUuGUGCCGUu -3'
miRNA:   3'- gUCGuUGCa--GGGCCaACGcUAUGGCG- -5'
19512 3' -54.2 NC_004685.1 + 118 0.66 0.856859
Target:  5'- gCGGUAGCGgcgaCCGGcgcggGCGcgGCUGCc -3'
miRNA:   3'- -GUCGUUGCag--GGCCaa---CGCuaUGGCG- -5'
19512 3' -54.2 NC_004685.1 + 28301 0.66 0.856859
Target:  5'- gAGCGGCGaggUGGaUGCGGUGCCGg -3'
miRNA:   3'- gUCGUUGCaggGCCaACGCUAUGGCg -5'
19512 3' -54.2 NC_004685.1 + 58445 0.66 0.856859
Target:  5'- gCGGCGugcaggAUGUCCuCGGUgGUGAUuUCGCg -3'
miRNA:   3'- -GUCGU------UGCAGG-GCCAaCGCUAuGGCG- -5'
19512 3' -54.2 NC_004685.1 + 775 0.66 0.848538
Target:  5'- gCAGCAGCGgccugaUCCuCGGcgGUGAUgacuccguugGCCGUg -3'
miRNA:   3'- -GUCGUUGC------AGG-GCCaaCGCUA----------UGGCG- -5'
19512 3' -54.2 NC_004685.1 + 9812 0.66 0.848538
Target:  5'- gCGGCgagGugGUCCCGGc-GCacaccUACCGCa -3'
miRNA:   3'- -GUCG---UugCAGGGCCaaCGcu---AUGGCG- -5'
19512 3' -54.2 NC_004685.1 + 53354 0.66 0.848538
Target:  5'- cCAGC-GCGgCgCCGGUggccgcgGCGAUGCUGg -3'
miRNA:   3'- -GUCGuUGCaG-GGCCAa------CGCUAUGGCg -5'
19512 3' -54.2 NC_004685.1 + 54655 0.66 0.848538
Target:  5'- gAGCAGCGUgCCGuccUGCGucagcaccuCCGCa -3'
miRNA:   3'- gUCGUUGCAgGGCca-ACGCuau------GGCG- -5'
19512 3' -54.2 NC_004685.1 + 21401 0.66 0.848538
Target:  5'- aCGGCGacgcguucuACGUgCCGGUguccUGC--UACCGCu -3'
miRNA:   3'- -GUCGU---------UGCAgGGCCA----ACGcuAUGGCG- -5'
19512 3' -54.2 NC_004685.1 + 11121 0.66 0.848538
Target:  5'- gGGCAuCGaCCUGGgcGCGGUgGCCGa -3'
miRNA:   3'- gUCGUuGCaGGGCCaaCGCUA-UGGCg -5'
19512 3' -54.2 NC_004685.1 + 29001 0.66 0.845998
Target:  5'- gGGCAccGCGUUCguucagcuggccaaCGG-UGCGGUcGCCGCg -3'
miRNA:   3'- gUCGU--UGCAGG--------------GCCaACGCUA-UGGCG- -5'
19512 3' -54.2 NC_004685.1 + 51308 0.66 0.839995
Target:  5'- uCAGCA-UGUCagcguCGGUgucUGUGAcGCCGCg -3'
miRNA:   3'- -GUCGUuGCAGg----GCCA---ACGCUaUGGCG- -5'
19512 3' -54.2 NC_004685.1 + 68334 0.66 0.839995
Target:  5'- -uGCGuGCGcCCCGGguccgugugUGCGugcGCCGCg -3'
miRNA:   3'- guCGU-UGCaGGGCCa--------ACGCua-UGGCG- -5'
19512 3' -54.2 NC_004685.1 + 8926 0.66 0.839995
Target:  5'- gGGCA-CGUCCCGGca-CGAcaccUGCCuGCg -3'
miRNA:   3'- gUCGUuGCAGGGCCaacGCU----AUGG-CG- -5'
19512 3' -54.2 NC_004685.1 + 59895 0.66 0.831241
Target:  5'- -cGCGGCGgCCgCGGUagGCGAaccccaGCCGCu -3'
miRNA:   3'- guCGUUGCaGG-GCCAa-CGCUa-----UGGCG- -5'
19512 3' -54.2 NC_004685.1 + 62250 0.66 0.831241
Target:  5'- aCGGCGGCGggggCgGGgaGUGAUACgCGCg -3'
miRNA:   3'- -GUCGUUGCag--GgCCaaCGCUAUG-GCG- -5'
19512 3' -54.2 NC_004685.1 + 48256 0.66 0.831241
Target:  5'- cCAGC-ACGU-CCGG-UGCGAUGgCGa -3'
miRNA:   3'- -GUCGuUGCAgGGCCaACGCUAUgGCg -5'
19512 3' -54.2 NC_004685.1 + 59818 0.66 0.831241
Target:  5'- cCAGCAGUGUgCCGGcccGUGAcgGCUGCa -3'
miRNA:   3'- -GUCGUUGCAgGGCCaa-CGCUa-UGGCG- -5'
19512 3' -54.2 NC_004685.1 + 7478 0.66 0.831241
Target:  5'- gCAGCAcggcuCGUCCaugugGGUggaagGCGcggGCCGCa -3'
miRNA:   3'- -GUCGUu----GCAGGg----CCAa----CGCua-UGGCG- -5'
19512 3' -54.2 NC_004685.1 + 9070 0.66 0.831241
Target:  5'- -cGCGACGUUgCGGUcacCGAguucaACCGCa -3'
miRNA:   3'- guCGUUGCAGgGCCAac-GCUa----UGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.