miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19512 5' -54.3 NC_004685.1 + 55161 0.66 0.802241
Target:  5'- -gGGGGUACgcaGauGCgGCAUCgGCACa -3'
miRNA:   3'- aaCUCCAUGaagC--UGgCGUAGgCGUG- -5'
19512 5' -54.3 NC_004685.1 + 48882 0.66 0.792527
Target:  5'- ---cGGUACUcgaccUCGguGCCGCGgggcugCCGCGCa -3'
miRNA:   3'- aacuCCAUGA-----AGC--UGGCGUa-----GGCGUG- -5'
19512 5' -54.3 NC_004685.1 + 12676 0.66 0.792527
Target:  5'- -gGAGGUGCg--GGCCGCAgagaaguucgcCCGCAa -3'
miRNA:   3'- aaCUCCAUGaagCUGGCGUa----------GGCGUg -5'
19512 5' -54.3 NC_004685.1 + 61850 0.66 0.782644
Target:  5'- --cGGGUGCgcagUCGGCUGUAgcagcggaCCGCACc -3'
miRNA:   3'- aacUCCAUGa---AGCUGGCGUa-------GGCGUG- -5'
19512 5' -54.3 NC_004685.1 + 20439 0.66 0.776637
Target:  5'- -cGAGGUgugcgcgcugauggcGCUgcguUCGGCCGCGUUgGcCACg -3'
miRNA:   3'- aaCUCCA---------------UGA----AGCUGGCGUAGgC-GUG- -5'
19512 5' -54.3 NC_004685.1 + 41846 0.66 0.772603
Target:  5'- -cGuGGUGCacggCGGCCGgGuguUCCGCGCc -3'
miRNA:   3'- aaCuCCAUGaa--GCUGGCgU---AGGCGUG- -5'
19512 5' -54.3 NC_004685.1 + 40413 0.66 0.772603
Target:  5'- gUGGGGUGCcagCGAagaaCGCcUCCuGCGCg -3'
miRNA:   3'- aACUCCAUGaa-GCUg---GCGuAGG-CGUG- -5'
19512 5' -54.3 NC_004685.1 + 46081 0.67 0.741651
Target:  5'- -aGuGGUGCcagauccaUCGACCGCGggggCCGCGa -3'
miRNA:   3'- aaCuCCAUGa-------AGCUGGCGUa---GGCGUg -5'
19512 5' -54.3 NC_004685.1 + 55612 0.67 0.72044
Target:  5'- cUGGGaUGCcUCGGCCGaagCCGCGCu -3'
miRNA:   3'- aACUCcAUGaAGCUGGCguaGGCGUG- -5'
19512 5' -54.3 NC_004685.1 + 12353 0.67 0.72044
Target:  5'- gUGAGGcGCUaUGaguaGCgGCAUCCGUACg -3'
miRNA:   3'- aACUCCaUGAaGC----UGgCGUAGGCGUG- -5'
19512 5' -54.3 NC_004685.1 + 14512 0.68 0.698875
Target:  5'- -cGGGGUGCaugugcCGauGCCGCAUCUGCGu -3'
miRNA:   3'- aaCUCCAUGaa----GC--UGGCGUAGGCGUg -5'
19512 5' -54.3 NC_004685.1 + 13879 0.68 0.666066
Target:  5'- aUGAgcuGGUGCUggaGGCCaaCGUCCGCACc -3'
miRNA:   3'- aACU---CCAUGAag-CUGGc-GUAGGCGUG- -5'
19512 5' -54.3 NC_004685.1 + 18517 0.68 0.655051
Target:  5'- -cGAGGa--UUCgGugCGCGUCCGCAa -3'
miRNA:   3'- aaCUCCaugAAG-CugGCGUAGGCGUg -5'
19512 5' -54.3 NC_004685.1 + 69308 0.68 0.650639
Target:  5'- -cGAGGcgGCUgucgaugcgcuggUGACCGCucgCCGCGCa -3'
miRNA:   3'- aaCUCCa-UGAa------------GCUGGCGua-GGCGUG- -5'
19512 5' -54.3 NC_004685.1 + 25622 0.72 0.452024
Target:  5'- -cGAGGUACUUggugaUGGCCGCGccgacgUCGCGCa -3'
miRNA:   3'- aaCUCCAUGAA-----GCUGGCGUa-----GGCGUG- -5'
19512 5' -54.3 NC_004685.1 + 44451 0.74 0.339318
Target:  5'- cUGGGGgACgccagcgaagaaaUCGGCCGCAUCCGCGa -3'
miRNA:   3'- aACUCCaUGa------------AGCUGGCGUAGGCGUg -5'
19512 5' -54.3 NC_004685.1 + 49314 0.76 0.25364
Target:  5'- -cGAGGUACUgcUCGGCCGCggCCaGCAg -3'
miRNA:   3'- aaCUCCAUGA--AGCUGGCGuaGG-CGUg -5'
19512 5' -54.3 NC_004685.1 + 51190 1.06 0.002186
Target:  5'- gUUGAGGUACUUCGACCGCAUCCGCACc -3'
miRNA:   3'- -AACUCCAUGAAGCUGGCGUAGGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.