miRNA display CGI


Results 1 - 20 of 159 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19513 5' -52.3 NC_004685.1 + 23719 0.65 0.927781
Target:  5'- uGGACGGCGagCGCCAcugGGGCUGgaagacgccuacucCGGCg -3'
miRNA:   3'- gCUUGCUGUg-GUGGUa--CUUGAC--------------GCCG- -5'
19513 5' -52.3 NC_004685.1 + 32891 0.66 0.923749
Target:  5'- -uGAUGACG-CACCAgcc-CUGCGGCu -3'
miRNA:   3'- gcUUGCUGUgGUGGUacuuGACGCCG- -5'
19513 5' -52.3 NC_004685.1 + 16035 0.66 0.923749
Target:  5'- aGAAgGGCGCgCGCCGcGAAUaccgcaucgGCGGCc -3'
miRNA:   3'- gCUUgCUGUG-GUGGUaCUUGa--------CGCCG- -5'
19513 5' -52.3 NC_004685.1 + 46583 0.66 0.923749
Target:  5'- --cGCG-CACCACC-UGGACagcgagGCGGUc -3'
miRNA:   3'- gcuUGCuGUGGUGGuACUUGa-----CGCCG- -5'
19513 5' -52.3 NC_004685.1 + 64289 0.66 0.923749
Target:  5'- -cAGCuuCACCACCGUGGugU-CGGUg -3'
miRNA:   3'- gcUUGcuGUGGUGGUACUugAcGCCG- -5'
19513 5' -52.3 NC_004685.1 + 16708 0.66 0.923749
Target:  5'- gGAACGuCugCACaGUGAg--GCGGCc -3'
miRNA:   3'- gCUUGCuGugGUGgUACUugaCGCCG- -5'
19513 5' -52.3 NC_004685.1 + 33452 0.66 0.923749
Target:  5'- gCGAagGCGACuggGCCGCCAcuugGGAcCUG-GGCa -3'
miRNA:   3'- -GCU--UGCUG---UGGUGGUa---CUU-GACgCCG- -5'
19513 5' -52.3 NC_004685.1 + 69280 0.66 0.923749
Target:  5'- cCGAGCu-CGCCGCCGccuacGAGCagcucgagGCGGCu -3'
miRNA:   3'- -GCUUGcuGUGGUGGUa----CUUGa-------CGCCG- -5'
19513 5' -52.3 NC_004685.1 + 12599 0.66 0.923749
Target:  5'- cCGAACG-CGCCGCC--GAGgUGCgcaaGGCc -3'
miRNA:   3'- -GCUUGCuGUGGUGGuaCUUgACG----CCG- -5'
19513 5' -52.3 NC_004685.1 + 6387 0.66 0.923749
Target:  5'- aGAuCGGauaAUCACCAUGAcACU-CGGCg -3'
miRNA:   3'- gCUuGCUg--UGGUGGUACU-UGAcGCCG- -5'
19513 5' -52.3 NC_004685.1 + 52675 0.66 0.923749
Target:  5'- gGAACGACACC-UCggGAAUgucaGGCa -3'
miRNA:   3'- gCUUGCUGUGGuGGuaCUUGacg-CCG- -5'
19513 5' -52.3 NC_004685.1 + 13316 0.66 0.923162
Target:  5'- -cGGCGuugcCGCCGCCGcggagucuggcgaUGAGCUGCaGCu -3'
miRNA:   3'- gcUUGCu---GUGGUGGU-------------ACUUGACGcCG- -5'
19513 5' -52.3 NC_004685.1 + 56918 0.66 0.923162
Target:  5'- -uGACGuGCACUgugugagccgcugGCCAUGA--UGCGGCg -3'
miRNA:   3'- gcUUGC-UGUGG-------------UGGUACUugACGCCG- -5'
19513 5' -52.3 NC_004685.1 + 7020 0.66 0.917756
Target:  5'- aCGGucGCGGCA--ACCAUGAGCggaGGCg -3'
miRNA:   3'- -GCU--UGCUGUggUGGUACUUGacgCCG- -5'
19513 5' -52.3 NC_004685.1 + 55121 0.66 0.917756
Target:  5'- --uGCGACGCCAauCCAgcagugGCGGCg -3'
miRNA:   3'- gcuUGCUGUGGU--GGUacuugaCGCCG- -5'
19513 5' -52.3 NC_004685.1 + 56819 0.66 0.917756
Target:  5'- gCGGAUuGgGCgGCgA-GAGCUGCGGCg -3'
miRNA:   3'- -GCUUGcUgUGgUGgUaCUUGACGCCG- -5'
19513 5' -52.3 NC_004685.1 + 25867 0.66 0.917756
Target:  5'- gCGAGCGGC-CCGCgCA-GGuCgggGCGGCc -3'
miRNA:   3'- -GCUUGCUGuGGUG-GUaCUuGa--CGCCG- -5'
19513 5' -52.3 NC_004685.1 + 382 0.66 0.917756
Target:  5'- gCGcauCGACAgCCGCCucGAGCUGCucguaGGCg -3'
miRNA:   3'- -GCuu-GCUGU-GGUGGuaCUUGACG-----CCG- -5'
19513 5' -52.3 NC_004685.1 + 41549 0.66 0.917756
Target:  5'- uGAACG-CAUCGCgucGAcgGCUGCGGUg -3'
miRNA:   3'- gCUUGCuGUGGUGguaCU--UGACGCCG- -5'
19513 5' -52.3 NC_004685.1 + 48375 0.66 0.917756
Target:  5'- ---cCGACAgCGCCGgugGAGgUGCuGGCg -3'
miRNA:   3'- gcuuGCUGUgGUGGUa--CUUgACG-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.