miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19514 3' -60.7 NC_004685.1 + 6712 0.66 0.539058
Target:  5'- -gACCGaGCAGGGCaaguugGCCUgCGUCGa- -3'
miRNA:   3'- ggUGGC-CGUCCCGg-----CGGAaGUAGCgc -5'
19514 3' -60.7 NC_004685.1 + 15226 0.66 0.52902
Target:  5'- gCGCUGGCGGucccGaCUGUCUUCAUCgGCGg -3'
miRNA:   3'- gGUGGCCGUCc---C-GGCGGAAGUAG-CGC- -5'
19514 3' -60.7 NC_004685.1 + 44586 0.66 0.519051
Target:  5'- gUCACCGagauGCAGGGCCGguaCCUcCAgaGCGg -3'
miRNA:   3'- -GGUGGC----CGUCCCGGC---GGAaGUagCGC- -5'
19514 3' -60.7 NC_004685.1 + 2708 0.66 0.509158
Target:  5'- aUCACCGGCaccgugaugauGGGGCCggugGCCUaCAUcuacgggcugccCGCGa -3'
miRNA:   3'- -GGUGGCCG-----------UCCCGG----CGGAaGUA------------GCGC- -5'
19514 3' -60.7 NC_004685.1 + 61202 0.66 0.506205
Target:  5'- cCCACCGGCgcucagccucggccAGcgcGGCCGCacccgUCuUCGCGc -3'
miRNA:   3'- -GGUGGCCG--------------UC---CCGGCGga---AGuAGCGC- -5'
19514 3' -60.7 NC_004685.1 + 41514 0.66 0.499345
Target:  5'- gUCGuuGGaugguGGGCCgagGCgUUCGUCGCGa -3'
miRNA:   3'- -GGUggCCgu---CCCGG---CGgAAGUAGCGC- -5'
19514 3' -60.7 NC_004685.1 + 12810 0.66 0.499345
Target:  5'- gCgGCUGGCGGGccguGCCGUCgacaagaaggUUGUCGCGa -3'
miRNA:   3'- -GgUGGCCGUCC----CGGCGGa---------AGUAGCGC- -5'
19514 3' -60.7 NC_004685.1 + 43821 0.66 0.489616
Target:  5'- cCCgACCuGCGcGGGCCGCUcgcccagaUUCAcaUCGCGc -3'
miRNA:   3'- -GG-UGGcCGU-CCCGGCGG--------AAGU--AGCGC- -5'
19514 3' -60.7 NC_004685.1 + 66485 0.66 0.489616
Target:  5'- aCCACaccuccaGGuCGGGGCgCGCCUcCcgCGCc -3'
miRNA:   3'- -GGUGg------CC-GUCCCG-GCGGAaGuaGCGc -5'
19514 3' -60.7 NC_004685.1 + 1201 0.67 0.470432
Target:  5'- -gACUGGCGGGGCCaggggGCCg-CAUCGg- -3'
miRNA:   3'- ggUGGCCGUCCCGG-----CGGaaGUAGCgc -5'
19514 3' -60.7 NC_004685.1 + 37317 0.67 0.470432
Target:  5'- gCAgUGggcGCAGGGCCucgguGCCgagaUCAUCGCGa -3'
miRNA:   3'- gGUgGC---CGUCCCGG-----CGGa---AGUAGCGC- -5'
19514 3' -60.7 NC_004685.1 + 17658 0.67 0.469483
Target:  5'- -gGCUGGCcaagaugucgaccGGGGCCGCCccggCGUCgGCa -3'
miRNA:   3'- ggUGGCCG-------------UCCCGGCGGaa--GUAG-CGc -5'
19514 3' -60.7 NC_004685.1 + 37621 0.67 0.460984
Target:  5'- cCCGCCGGUcaGGCCGUgU--GUCGUGg -3'
miRNA:   3'- -GGUGGCCGucCCGGCGgAagUAGCGC- -5'
19514 3' -60.7 NC_004685.1 + 6372 0.67 0.460984
Target:  5'- aCCGCUGGCAGGGUgacaucgacUGCCcgaagUGCGg -3'
miRNA:   3'- -GGUGGCCGUCCCG---------GCGGaaguaGCGC- -5'
19514 3' -60.7 NC_004685.1 + 57911 0.67 0.460984
Target:  5'- aCCACCGGaguGGGCgGCCcgccgUCcUUGCc -3'
miRNA:   3'- -GGUGGCCgu-CCCGgCGGa----AGuAGCGc -5'
19514 3' -60.7 NC_004685.1 + 20962 0.67 0.451638
Target:  5'- aUCACCGGCcGGGUguuCGgCUUCAUCa-- -3'
miRNA:   3'- -GGUGGCCGuCCCG---GCgGAAGUAGcgc -5'
19514 3' -60.7 NC_004685.1 + 9247 0.67 0.451638
Target:  5'- gCCAgCGcCGGGGCCGCCgaaacccCGCGu -3'
miRNA:   3'- -GGUgGCcGUCCCGGCGGaagua--GCGC- -5'
19514 3' -60.7 NC_004685.1 + 31236 0.67 0.451638
Target:  5'- gCGUCGGCucGGGCCugGUCggCAUCGCGg -3'
miRNA:   3'- gGUGGCCGu-CCCGG--CGGaaGUAGCGC- -5'
19514 3' -60.7 NC_004685.1 + 31837 0.67 0.442396
Target:  5'- cCCGCUGccGCAGGGCuaugCGCCgcagcaGUCGCa -3'
miRNA:   3'- -GGUGGC--CGUCCCG----GCGGaag---UAGCGc -5'
19514 3' -60.7 NC_004685.1 + 14267 0.67 0.442396
Target:  5'- -gACCGGCGaGGCCaCCgaCAUCGUGu -3'
miRNA:   3'- ggUGGCCGUcCCGGcGGaaGUAGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.