miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19514 5' -55.3 NC_004685.1 + 1918 0.66 0.811506
Target:  5'- gGCCgcGGUUGGCGUcagcggCGACgGGcGUGGGc- -3'
miRNA:   3'- -CGG--CCAACCGCA------GCUGgUC-CAUCUac -5'
19514 5' -55.3 NC_004685.1 + 27674 0.66 0.802211
Target:  5'- uGCCGuca-GCGUCGAUCGGGgcGAa- -3'
miRNA:   3'- -CGGCcaacCGCAGCUGGUCCauCUac -5'
19514 5' -55.3 NC_004685.1 + 23250 0.66 0.802211
Target:  5'- aGCUGGaUGGCcugaUCGAgCcGGUGGGUGu -3'
miRNA:   3'- -CGGCCaACCGc---AGCUgGuCCAUCUAC- -5'
19514 5' -55.3 NC_004685.1 + 1064 0.66 0.802211
Target:  5'- cGCgGGUUGGUGUUGcCCgcgcaguccugcGGGcGGAUGc -3'
miRNA:   3'- -CGgCCAACCGCAGCuGG------------UCCaUCUAC- -5'
19514 5' -55.3 NC_004685.1 + 18038 0.66 0.78312
Target:  5'- uGCCGcaguucauggUGGUGUCGuucgacGCCGGGcAGAUGg -3'
miRNA:   3'- -CGGCca--------ACCGCAGC------UGGUCCaUCUAC- -5'
19514 5' -55.3 NC_004685.1 + 62861 0.66 0.777272
Target:  5'- aGCCGGUgcgccuggGGCGgugCGAaguagccgccggucaCCGGGggcgGGGUGu -3'
miRNA:   3'- -CGGCCAa-------CCGCa--GCU---------------GGUCCa---UCUAC- -5'
19514 5' -55.3 NC_004685.1 + 14136 0.66 0.763429
Target:  5'- gGCUGGagcugGGCGagccCGACCGGGUgaagggcauucAGAUGc -3'
miRNA:   3'- -CGGCCaa---CCGCa---GCUGGUCCA-----------UCUAC- -5'
19514 5' -55.3 NC_004685.1 + 66992 0.66 0.763429
Target:  5'- uGCCGGUgaUGGCGgcgacagCGGCCGcGUcuccccAGAUGc -3'
miRNA:   3'- -CGGCCA--ACCGCa------GCUGGUcCA------UCUAC- -5'
19514 5' -55.3 NC_004685.1 + 42210 0.66 0.762431
Target:  5'- cGCagGGUUGGCGcagagcuUCGGgCAGGUGugccGAUGa -3'
miRNA:   3'- -CGg-CCAACCGC-------AGCUgGUCCAU----CUAC- -5'
19514 5' -55.3 NC_004685.1 + 2875 0.67 0.753385
Target:  5'- gGCCGGUgcgcacGGCGcUGGCCAGGa----- -3'
miRNA:   3'- -CGGCCAa-----CCGCaGCUGGUCCaucuac -5'
19514 5' -55.3 NC_004685.1 + 16500 0.67 0.753385
Target:  5'- aGCUGGUcGGCGUCGugCAGu------ -3'
miRNA:   3'- -CGGCCAaCCGCAGCugGUCcaucuac -5'
19514 5' -55.3 NC_004685.1 + 41144 0.67 0.752374
Target:  5'- cGCCGG-UGGCGUCuccugGACCggcgacaacaucaAGGUAGc-- -3'
miRNA:   3'- -CGGCCaACCGCAG-----CUGG-------------UCCAUCuac -5'
19514 5' -55.3 NC_004685.1 + 19152 0.67 0.722586
Target:  5'- cCUGGUcGGCGUCGGgCuguGGgaggAGAUGg -3'
miRNA:   3'- cGGCCAaCCGCAGCUgGu--CCa---UCUAC- -5'
19514 5' -55.3 NC_004685.1 + 15200 0.67 0.722586
Target:  5'- aGUCGGcgUGGCGUUcGCCGGGcGGcUGg -3'
miRNA:   3'- -CGGCCa-ACCGCAGcUGGUCCaUCuAC- -5'
19514 5' -55.3 NC_004685.1 + 37477 0.68 0.691012
Target:  5'- uUCGGc-GGCGUCGACUGGG-AGAa- -3'
miRNA:   3'- cGGCCaaCCGCAGCUGGUCCaUCUac -5'
19514 5' -55.3 NC_004685.1 + 25757 0.68 0.688887
Target:  5'- aCUGGUUGGCGUUGuuggugggcaguCCAgGGUAGGa- -3'
miRNA:   3'- cGGCCAACCGCAGCu-----------GGU-CCAUCUac -5'
19514 5' -55.3 NC_004685.1 + 7451 0.68 0.680365
Target:  5'- cGCCGccgUGGCugacaaGUCGAaugcCCAGGUAGAg- -3'
miRNA:   3'- -CGGCca-ACCG------CAGCU----GGUCCAUCUac -5'
19514 5' -55.3 NC_004685.1 + 30181 0.68 0.680365
Target:  5'- uCCGGUggGGCGUCGuCCGGcucgcuGAUGa -3'
miRNA:   3'- cGGCCAa-CCGCAGCuGGUCcau---CUAC- -5'
19514 5' -55.3 NC_004685.1 + 31223 0.68 0.658949
Target:  5'- cCCGGUggcaagGGCGUCGGCuCGGGccuGGUc -3'
miRNA:   3'- cGGCCAa-----CCGCAGCUG-GUCCau-CUAc -5'
19514 5' -55.3 NC_004685.1 + 1851 0.69 0.615908
Target:  5'- -aCGGUgaccagcucGGCuUCGGCCAGGUugaGGAUGg -3'
miRNA:   3'- cgGCCAa--------CCGcAGCUGGUCCA---UCUAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.