miRNA display CGI


Results 1 - 20 of 122 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
19515 3' -54.9 NC_004685.1 + 31576 0.66 0.81313
Target:  5'- uGAGCGCCuGAaugcgGCCcagCAGGUcuugCAGCUg -3'
miRNA:   3'- -CUUGCGG-CUg----CGGua-GUCCAa---GUCGG- -5'
19515 3' -54.9 NC_004685.1 + 67116 0.66 0.81313
Target:  5'- cGACGCuCGGCGCgGcgCAGug-CAGCCu -3'
miRNA:   3'- cUUGCG-GCUGCGgUa-GUCcaaGUCGG- -5'
19515 3' -54.9 NC_004685.1 + 49356 0.66 0.81313
Target:  5'- --uCGCCGcCGCCGUCcGGcccgUCGGgCa -3'
miRNA:   3'- cuuGCGGCuGCGGUAGuCCa---AGUCgG- -5'
19515 3' -54.9 NC_004685.1 + 29900 0.66 0.81313
Target:  5'- --uCGUCGugGCgGUCguccccAGG-UCGGCCa -3'
miRNA:   3'- cuuGCGGCugCGgUAG------UCCaAGUCGG- -5'
19515 3' -54.9 NC_004685.1 + 20481 0.66 0.81313
Target:  5'- -cACGCgGACGCCAgCAGucaUCAccGCCg -3'
miRNA:   3'- cuUGCGgCUGCGGUaGUCca-AGU--CGG- -5'
19515 3' -54.9 NC_004685.1 + 21527 0.66 0.81313
Target:  5'- ---aGCCGG-GCCAcaUCGGGc-CAGCCg -3'
miRNA:   3'- cuugCGGCUgCGGU--AGUCCaaGUCGG- -5'
19515 3' -54.9 NC_004685.1 + 11758 0.66 0.812205
Target:  5'- gGAGCGCCGcgaggagcugcacGCaGCCAUCgccgAGGcgCGGCg -3'
miRNA:   3'- -CUUGCGGC-------------UG-CGGUAG----UCCaaGUCGg -5'
19515 3' -54.9 NC_004685.1 + 17474 0.66 0.803793
Target:  5'- -cGCGCUGAgGUCAuguUCGGGUgUAGCg -3'
miRNA:   3'- cuUGCGGCUgCGGU---AGUCCAaGUCGg -5'
19515 3' -54.9 NC_004685.1 + 62253 0.66 0.803793
Target:  5'- aGAUGCUGGaaccCGCCgGUgAGGUagUCGGCCu -3'
miRNA:   3'- cUUGCGGCU----GCGG-UAgUCCA--AGUCGG- -5'
19515 3' -54.9 NC_004685.1 + 20448 0.66 0.803793
Target:  5'- -cGCGCUGAUGgCG-CuGcGUUCGGCCg -3'
miRNA:   3'- cuUGCGGCUGCgGUaGuC-CAAGUCGG- -5'
19515 3' -54.9 NC_004685.1 + 9209 0.66 0.803793
Target:  5'- gGGGCGaccCCGACGCCA--AGGa--GGCCa -3'
miRNA:   3'- -CUUGC---GGCUGCGGUagUCCaagUCGG- -5'
19515 3' -54.9 NC_004685.1 + 38612 0.66 0.798107
Target:  5'- cGAGCGCCGcacccaugucgccgaGCGCUucgcgUAGGUcaUCGGCg -3'
miRNA:   3'- -CUUGCGGC---------------UGCGGua---GUCCA--AGUCGg -5'
19515 3' -54.9 NC_004685.1 + 5479 0.66 0.794281
Target:  5'- cGGCGCgguuCGugGCCGaCAuGGUggCGGCCa -3'
miRNA:   3'- cUUGCG----GCugCGGUaGU-CCAa-GUCGG- -5'
19515 3' -54.9 NC_004685.1 + 37434 0.66 0.794281
Target:  5'- cGGCgGCCGACGCgGcCGcGUUCAGCg -3'
miRNA:   3'- cUUG-CGGCUGCGgUaGUcCAAGUCGg -5'
19515 3' -54.9 NC_004685.1 + 30366 0.66 0.794281
Target:  5'- --cUGaCCGACGCCGacaAGGcUCGGCUg -3'
miRNA:   3'- cuuGC-GGCUGCGGUag-UCCaAGUCGG- -5'
19515 3' -54.9 NC_004685.1 + 36593 0.66 0.794281
Target:  5'- ---gGCCGACGCCGaggaccuggCGGGUgcgCucGCCg -3'
miRNA:   3'- cuugCGGCUGCGGUa--------GUCCAa--Gu-CGG- -5'
19515 3' -54.9 NC_004685.1 + 10882 0.66 0.794281
Target:  5'- --uUGCUGACGCCGUCuuaucucuuccGGGUguugCGGUa -3'
miRNA:   3'- cuuGCGGCUGCGGUAG-----------UCCAa---GUCGg -5'
19515 3' -54.9 NC_004685.1 + 39272 0.66 0.794281
Target:  5'- cAACGCCu-CGCCGU---GUUCGGCCc -3'
miRNA:   3'- cUUGCGGcuGCGGUAgucCAAGUCGG- -5'
19515 3' -54.9 NC_004685.1 + 2881 0.66 0.793321
Target:  5'- -uGCGCaCGGCGCUggccaggAUCGGGcaccCGGCCc -3'
miRNA:   3'- cuUGCG-GCUGCGG-------UAGUCCaa--GUCGG- -5'
19515 3' -54.9 NC_004685.1 + 63220 0.66 0.793321
Target:  5'- --uCGCCGAUGCUGUCgucccagcacgacGGGUugUCGcGCCa -3'
miRNA:   3'- cuuGCGGCUGCGGUAG-------------UCCA--AGU-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.